Looks like this is the actual issue:

After removing 'configure', it's apparent that 'autogen.sh' doesn't
regenerate it, instead giving ambiguous errors/warnings..

For anyone else's reference, this occurs with

autoconf 2.68
automake 1.9.6 + 1.11.1
glib 2.26.1
gtk 2.22.1

output log of './autogen.sh --prefix=/usr' follows:


WARNING: aclocal's directory is /usr/local/share/aclocal, but...
         no file /usr/local/share/aclocal/glib-2.0.m4
         You may see fatal macro warnings below.
         If these files are installed in /some/dir, set the
         ACLOCAL_FLAGS environment variable to "-I /some/dir"
         or install /usr/local/share/aclocal/glib-2.0.m4.

[... (repeats x 4)]

aclocal:configure.ac:425: warning: macro `AM_GLIB_GNU_GETTEXT' not
found in library
aclocal:configure.ac:450: warning: macro `AM_PATH_GLIB_2_0' not found in library
aclocal:configure.ac:479: warning: macro `AM_PATH_GTK_2_0' not found in library
configure.ac:157: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call
detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from...
/usr/local/share/aclocal/libtool.m4:363: _LT_AC_SYS_LIBPATH_AIX is
expanded from...
/usr/local/share/aclocal/libtool.m4:5560: AC_LIBTOOL_PROG_LD_SHLIBS is
expanded from...
/usr/local/share/aclocal/libtool.m4:2783: _LT_AC_LANG_C_CONFIG is
expanded from...
/usr/local/share/aclocal/libtool.m4:2782: AC_LIBTOOL_LANG_C_CONFIG is
expanded from...
/usr/local/share/aclocal/libtool.m4:80: AC_LIBTOOL_SETUP is expanded from...
/usr/local/share/aclocal/libtool.m4:60: _AC_PROG_LIBTOOL is expanded from...
/usr/local/share/aclocal/libtool.m4:25: AC_PROG_LIBTOOL is expanded from...
/usr/local/share/aclocal/libtool.m4:6548: AM_PROG_LIBTOOL is expanded from...
configure.ac:157: the top level
configure.ac:157: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call
detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from...
/usr/local/share/aclocal/libtool.m4:363: _LT_AC_SYS_LIBPATH_AIX is
expanded from...
/usr/local/share/aclocal/libtool.m4:2864: _LT_AC_LANG_CXX_CONFIG is
expanded from...
/usr/local/share/aclocal/libtool.m4:2863: AC_LIBTOOL_LANG_CXX_CONFIG
is expanded from...
/usr/local/share/aclocal/libtool.m4:1908: _LT_AC_TAGCONFIG is expanded from...
/usr/local/share/aclocal/libtool.m4:80: AC_LIBTOOL_SETUP is expanded from...
/usr/local/share/aclocal/libtool.m4:60: _AC_PROG_LIBTOOL is expanded from...
/usr/local/share/aclocal/libtool.m4:25: AC_PROG_LIBTOOL is expanded from...
/usr/local/share/aclocal/libtool.m4:6548: AM_PROG_LIBTOOL is expanded from...
configure.ac:157: the top level
configure.ac:157: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call
detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from...
/usr/local/share/aclocal/libtool.m4:363: _LT_AC_SYS_LIBPATH_AIX is
expanded from...
/usr/local/share/aclocal/libtool.m4:5560: AC_LIBTOOL_PROG_LD_SHLIBS is
expanded from...
/usr/local/share/aclocal/libtool.m4:4177: _LT_AC_LANG_GCJ_CONFIG is
expanded from...
/usr/local/share/aclocal/libtool.m4:4176: AC_LIBTOOL_LANG_GCJ_CONFIG
is expanded from...
/usr/local/share/aclocal/libtool.m4:1908: _LT_AC_TAGCONFIG is expanded from...
/usr/local/share/aclocal/libtool.m4:80: AC_LIBTOOL_SETUP is expanded from...
/usr/local/share/aclocal/libtool.m4:60: _AC_PROG_LIBTOOL is expanded from...
/usr/local/share/aclocal/libtool.m4:25: AC_PROG_LIBTOOL is expanded from...
/usr/local/share/aclocal/libtool.m4:6548: AM_PROG_LIBTOOL is expanded from...
configure.ac:157: the top level
configure.ac:157: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call
detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from...
aclocal.m4:369: _LT_AC_SYS_LIBPATH_AIX is expanded from...
aclocal.m4:5554: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
aclocal.m4:2789: _LT_AC_LANG_C_CONFIG is expanded from...
aclocal.m4:2788: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
aclocal.m4:86: AC_LIBTOOL_SETUP is expanded from...
aclocal.m4:66: _AC_PROG_LIBTOOL is expanded from...
aclocal.m4:31: AC_PROG_LIBTOOL is expanded from...
aclocal.m4:6542: AM_PROG_LIBTOOL is expanded from...
configure.ac:157: the top level
configure.ac:157: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call
detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from...
aclocal.m4:369: _LT_AC_SYS_LIBPATH_AIX is expanded from...
aclocal.m4:2866: _LT_AC_LANG_CXX_CONFIG is expanded from...
aclocal.m4:2865: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
aclocal.m4:1914: _LT_AC_TAGCONFIG is expanded from...
aclocal.m4:86: AC_LIBTOOL_SETUP is expanded from...
aclocal.m4:66: _AC_PROG_LIBTOOL is expanded from...
aclocal.m4:31: AC_PROG_LIBTOOL is expanded from...
aclocal.m4:6542: AM_PROG_LIBTOOL is expanded from...
configure.ac:157: the top level
configure.ac:157: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call
detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from...
aclocal.m4:369: _LT_AC_SYS_LIBPATH_AIX is expanded from...
aclocal.m4:5554: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
aclocal.m4:4175: _LT_AC_LANG_GCJ_CONFIG is expanded from...
aclocal.m4:4174: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
aclocal.m4:1914: _LT_AC_TAGCONFIG is expanded from...
aclocal.m4:86: AC_LIBTOOL_SETUP is expanded from...
aclocal.m4:66: _AC_PROG_LIBTOOL is expanded from...
aclocal.m4:31: AC_PROG_LIBTOOL is expanded from...
aclocal.m4:6542: AM_PROG_LIBTOOL is expanded from...
configure.ac:157: the top level
Useless use of /d modifier in transliteration operator at
/usr/local/share/automake-1.9/Automake/Wrap.pm line 60.
configure.ac:157: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call
detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from...
aclocal.m4:369: _LT_AC_SYS_LIBPATH_AIX is expanded from...
aclocal.m4:5554: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
aclocal.m4:2789: _LT_AC_LANG_C_CONFIG is expanded from...
aclocal.m4:2788: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
aclocal.m4:86: AC_LIBTOOL_SETUP is expanded from...
aclocal.m4:66: _AC_PROG_LIBTOOL is expanded from...
aclocal.m4:31: AC_PROG_LIBTOOL is expanded from...
aclocal.m4:6542: AM_PROG_LIBTOOL is expanded from...
configure.ac:157: the top level
configure.ac:157: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call
detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from...
aclocal.m4:369: _LT_AC_SYS_LIBPATH_AIX is expanded from...
aclocal.m4:2866: _LT_AC_LANG_CXX_CONFIG is expanded from...
aclocal.m4:2865: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
aclocal.m4:1914: _LT_AC_TAGCONFIG is expanded from...
aclocal.m4:86: AC_LIBTOOL_SETUP is expanded from...
aclocal.m4:66: _AC_PROG_LIBTOOL is expanded from...
aclocal.m4:31: AC_PROG_LIBTOOL is expanded from...
aclocal.m4:6542: AM_PROG_LIBTOOL is expanded from...
configure.ac:157: the top level
configure.ac:157: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call
detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from...
aclocal.m4:369: _LT_AC_SYS_LIBPATH_AIX is expanded from...
aclocal.m4:5554: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
aclocal.m4:4175: _LT_AC_LANG_GCJ_CONFIG is expanded from...
aclocal.m4:4174: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
aclocal.m4:1914: _LT_AC_TAGCONFIG is expanded from...
aclocal.m4:86: AC_LIBTOOL_SETUP is expanded from...
aclocal.m4:66: _AC_PROG_LIBTOOL is expanded from...
aclocal.m4:31: AC_PROG_LIBTOOL is expanded from...
aclocal.m4:6542: AM_PROG_LIBTOOL is expanded from...
configure.ac:157: the top level
gtk-doc.make:7: GTK_DOC_USE_LIBTOOL does not appear in AM_CONDITIONAL
devel-docs/app/Makefile.am:117:   `gtk-doc.make' included from here
gtk-doc.make:7: GTK_DOC_USE_LIBTOOL does not appear in AM_CONDITIONAL
devel-docs/libgimp/Makefile.am:64:   `gtk-doc.make' included from here
gtk-doc.make:7: GTK_DOC_USE_LIBTOOL does not appear in AM_CONDITIONAL
devel-docs/libgimpbase/Makefile.am:52:   `gtk-doc.make' included from here
gtk-doc.make:7: GTK_DOC_USE_LIBTOOL does not appear in AM_CONDITIONAL
devel-docs/libgimpcolor/Makefile.am:46:   `gtk-doc.make' included from here
gtk-doc.make:7: GTK_DOC_USE_LIBTOOL does not appear in AM_CONDITIONAL
devel-docs/libgimpconfig/Makefile.am:57:   `gtk-doc.make' included from here
gtk-doc.make:7: GTK_DOC_USE_LIBTOOL does not appear in AM_CONDITIONAL
devel-docs/libgimpmath/Makefile.am:46:   `gtk-doc.make' included from here
gtk-doc.make:7: GTK_DOC_USE_LIBTOOL does not appear in AM_CONDITIONAL
devel-docs/libgimpmodule/Makefile.am:53:   `gtk-doc.make' included from here
gtk-doc.make:7: GTK_DOC_USE_LIBTOOL does not appear in AM_CONDITIONAL
devel-docs/libgimpthumb/Makefile.am:54:   `gtk-doc.make' included from here
gtk-doc.make:7: GTK_DOC_USE_LIBTOOL does not appear in AM_CONDITIONAL
devel-docs/libgimpwidgets/Makefile.am:66:   `gtk-doc.make' included from here
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