I've been happy with dcraw and ufraw, however I haven't noticed or had noise problems. I have been running the latest version (ufraw 0.8.1). So my only suggestion is to make sure you are running the latest and greatest.
First, the ufraw plugin, and the dcraw program, seem to fall down in one
respect: my converted images are often much noisier than the JPEGs produced
Thanks to Stephen's suggestion I did take a look at Bibble. Nice to see a Linux app. It also appears to encourage GPL plugins.
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