Actually that problem with the Windows clipboard (on XP ) stripping the alpha 
channel seems vanished (maybe some recent Windows update? )

And anyway is possible that was a issue only on XP not on Vista or 7
> Am I the only one using GIMP who has no such problems when
> copy/pasting
> with the clipboard? Granted generally I do it between two
> images opened
> in the GIMP to begin with, but still. I've copy/pasted text
> layers,
> layers with an alpha channel, etc with no problem
> what-so-ever.

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