I am trying to run the following command in pseudo-distributed mode from the Getting Started example page: hadoop jar giraph-0.70-jar-with-dependencies.jar org.apache.giraph.benchmark.PageRankBenchmark -e 1 -s 3 -v -V 50000000 -w 30
Here is the task log output: 2011-09-07 15:41:34,311 WARN org.apache.hadoop.util.NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable 2011-09-07 15:41:34,529 WARN org.apache.hadoop.metrics2.impl.MetricsSystemImpl: Source name ugi already exists! 2011-09-07 15:41:34,641 WARN org.apache.giraph.bsp.BspOutputFormat: getOutputCommitter: Returning ImmutableOutputCommiter (does nothing). 2011-09-07 15:41:34,688 INFO org.apache.giraph.graph.GraphMapper: setup: jar file @ /tmp/hadoop-kyle/mapred/local/taskTracker/kyle/jobcache/job_201109071501_0003/jars/job.jar, using /tmp/hadoop-kyle/mapred/local/taskTracker/kyle/jobcache/job_201109071501_0003/jars/job.jar 2011-09-07 15:41:34,694 INFO org.apache.giraph.zk.ZooKeeperManager: createCandidateStamp: Made the directory _bsp/_defaultZkManagerDir/job_201109071501_0003 2011-09-07 15:41:34,695 INFO org.apache.giraph.zk.ZooKeeperManager: createCandidateStamp: Creating my filestamp _bsp/_defaultZkManagerDir/job_201109071501_0003/_task/new-host-3.home 0 2011-09-07 15:41:34,710 INFO org.apache.giraph.zk.ZooKeeperManager: getZooKeeperServerList: Got [new-host-3.home] 1 hosts from 1 candidates when 1 required (polling period is 3000) on attempt 0 2011-09-07 15:41:34,711 INFO org.apache.giraph.zk.ZooKeeperManager: createZooKeeperServerList: Creating the final ZooKeeper file '_bsp/_defaultZkManagerDir/job_201109071501_0003/zkServerList_new-host-3.home 0 ' 2011-09-07 15:41:34,717 INFO org.apache.giraph.zk.ZooKeeperManager: getZooKeeperServerList: For task 0, got file 'zkServerList_new-host-3.home 0 ' (polling period is 3000) 2011-09-07 15:41:34,718 INFO org.apache.giraph.zk.ZooKeeperManager: getZooKeeperServerList: Found [new-host-3.home, 0] 2 hosts in filename 'zkServerList_new-host-3.home 0 ' 2011-09-07 15:41:34,720 INFO org.apache.giraph.zk.ZooKeeperManager: onlineZooKeeperServers: Trying to delete old directory /tmp/hadoop-kyle/mapred/local/taskTracker/kyle/jobcache/job_201109071501_0003/work/_bspZooKeeper 2011-09-07 15:41:34,724 INFO org.apache.giraph.zk.ZooKeeperManager: generateZooKeeperConfigFile: Creating file /tmp/hadoop-kyle/mapred/local/taskTracker/kyle/jobcache/job_201109071501_0003/work/_bspZooKeeper/zoo.cfg in /tmp/hadoop-kyle/mapred/local/taskTracker/kyle/jobcache/job_201109071501_0003/work/_bspZooKeeper with base port 22181 2011-09-07 15:41:34,724 INFO org.apache.giraph.zk.ZooKeeperManager: generateZooKeeperConfigFile: Make directory of _bspZooKeeper = true 2011-09-07 15:41:34,724 INFO org.apache.giraph.zk.ZooKeeperManager: generateZooKeeperConfigFile: Delete of zoo.cfg = false 2011-09-07 15:41:34,726 INFO org.apache.giraph.zk.ZooKeeperManager: onlineZooKeeperServers: Attempting to start ZooKeeper server with command [/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/bin/java, -Xmx256m, -XX:ParallelGCThreads=4, -XX:+UseConcMarkSweepGC, -XX:CMSInitiatingOccupancyFraction=70, -XX:MaxGCPauseMillis=100, -cp, /tmp/hadoop-kyle/mapred/local/taskTracker/kyle/jobcache/job_201109071501_0003/jars/job.jar, org.apache.zookeeper.server.quorum.QuorumPeerMain, /tmp/hadoop-kyle/mapred/local/taskTracker/kyle/jobcache/job_201109071501_0003/work/_bspZooKeeper/zoo.cfg] in directory /tmp/hadoop-kyle/mapred/local/taskTracker/kyle/jobcache/job_201109071501_0003/work/_bspZooKeeper 2011-09-07 15:41:34,748 INFO org.apache.giraph.zk.ZooKeeperManager: onlineZooKeeperServers: Connect attempt 0 of 10 max trying to connect to new-host-3.home:22181 with poll msecs = 3000 2011-09-07 15:41:34,775 WARN org.apache.giraph.zk.ZooKeeperManager: onlineZooKeeperServers: Got ConnectException java.net.ConnectException: Connection refused at java.net.PlainSocketImpl.socketConnect(Native Method) at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:351) at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:213) at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:200) at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:432) at java.net.Socket.connect(Socket.java:529) at org.apache.giraph.zk.ZooKeeperManager.onlineZooKeeperServers(ZooKeeperManager.java:611) at org.apache.giraph.graph.GraphMapper.setup(GraphMapper.java:419) at org.apache.hadoop.mapreduce.Mapper.run(Mapper.java:142) at org.apache.hadoop.mapred.MapTask.runNewMapper(MapTask.java:763) at org.apache.hadoop.mapred.MapTask.run(MapTask.java:369) at org.apache.hadoop.mapred.Child$4.run(Child.java:259) at java.security.AccessController.doPrivileged(Native Method) at javax.security.auth.Subject.doAs(Subject.java:396) at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1059) at org.apache.hadoop.mapred.Child.main(Child.java:253) 2011-09-07 15:41:37,776 INFO org.apache.giraph.zk.ZooKeeperManager: onlineZooKeeperServers: Connect attempt 1 of 10 max trying to connect to new-host-3.home:22181 with poll msecs = 3000 2011-09-07 15:41:37,777 INFO org.apache.giraph.zk.ZooKeeperManager: onlineZooKeeperServers: Connected to new-host-3.home/192.168.1.6:22181! 2011-09-07 15:41:37,777 INFO org.apache.giraph.zk.ZooKeeperManager: onlineZooKeeperServers: Creating my filestamp _bsp/_defaultZkManagerDir/job_201109071501_0003/_zkServer/new-host-3.home 0 2011-09-07 15:41:37,782 INFO org.apache.giraph.graph.GraphMapper: setup: Starting up BspServiceMaster (master thread)... 2011-09-07 15:41:37,791 INFO org.apache.giraph.graph.BspService: BspService: Connecting to ZooKeeper with job job_201109071501_0003, 0 on new-host-3.home:22181 2011-09-07 15:41:37,797 INFO org.apache.zookeeper.ZooKeeper: Client environment:zookeeper.version=3.3.1-942149, built on 05/07/2010 17:14 GMT 2011-09-07 15:41:37,797 INFO org.apache.zookeeper.ZooKeeper: Client environment:host.name=new-host-3.home 2011-09-07 15:41:37,797 INFO org.apache.zookeeper.ZooKeeper: Client environment:java.version=1.6.0_26 2011-09-07 15:41:37,798 INFO org.apache.zookeeper.ZooKeeper: Client environment:java.vendor=Apple Inc. 2011-09-07 15:41:37,798 INFO org.apache.zookeeper.ZooKeeper: Client environment:java.home=/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home 2011-09-07 15:41:37,798 INFO org.apache.zookeeper.ZooKeeper: Client environment:java.class.path=/tmp/hadoop-kyle/mapred/local/taskTracker/kyle/jobcache/job_201109071501_0003/jars/classes:/tmp/hadoop-kyle/mapred/local/taskTracker/kyle/jobcache/job_201109071501_0003/jars:/tmp/hadoop-kyle/mapred/local/taskTracker/kyle/jobcache/job_201109071501_0003/attempt_201109071501_0003_m_000000_0/work:/Users/kyle/hadoop/bin/../conf:/System/Library/Frameworks/JavaVM.framework/Home//lib/tools.jar:/Users/kyle/hadoop/bin/..:/Users/kyle/hadoop/bin/../hadoop-core-0.20.203.0.jar:/Users/kyle/hadoop/bin/../lib/aspectjrt-1.6.5.jar:/Users/kyle/hadoop/bin/../lib/aspectjtools-1.6.5.jar:/Users/kyle/hadoop/bin/../lib/commons-beanutils-1.7.0.jar:/Users/kyle/hadoop/bin/../lib/commons-beanutils-core-1.8.0.jar:/Users/kyle/hadoop/bin/../lib/commons-cli-1.2.jar:/Users/kyle/hadoop/bin/../lib/commons-codec-1.4.jar:/Users/kyle/hadoop/bin/../lib/commons-collections-3.2.1.jar:/Users/kyle/hadoop/bin/../lib/commons-configuration-1.6.jar:/Users/kyle/hadoop/bin/../lib/commons-daemon-1.0.1.jar:/Users/kyle/hadoop/bin/../lib/commons-digester-1.8.jar:/Users/kyle/hadoop/bin/../lib/commons-el-1.0.jar:/Users/kyle/hadoop/bin/../lib/commons-httpclient-3.0.1.jar:/Users/kyle/hadoop/bin/../lib/commons-lang-2.4.jar:/Users/kyle/hadoop/bin/../lib/commons-logging-1.1.1.jar:/Users/kyle/hadoop/bin/../lib/commons-logging-api-1.0.4.jar:/Users/kyle/hadoop/bin/../lib/commons-math-2.1.jar:/Users/kyle/hadoop/bin/../lib/commons-net-1.4.1.jar:/Users/kyle/hadoop/bin/../lib/core-3.1.1.jar:/Users/kyle/hadoop/bin/../lib/hsqldb-1.8.0.10.jar:/Users/kyle/hadoop/bin/../lib/jackson-core-asl-1.0.1.jar:/Users/kyle/hadoop/bin/../lib/jackson-mapper-asl-1.0.1.jar:/Users/kyle/hadoop/bin/../lib/jasper-compiler-5.5.12.jar:/Users/kyle/hadoop/bin/../lib/jasper-runtime-5.5.12.jar:/Users/kyle/hadoop/bin/../lib/jets3t-0.6.1.jar:/Users/kyle/hadoop/bin/../lib/jetty-6.1.26.jar:/Users/kyle/hadoop/bin/../lib/jetty-util-6.1.26.jar:/Users/kyle/hadoop/bin/../lib/jsch-0.1.42.jar:/Users/kyle/hadoop/bin/../lib/junit-4.5.jar:/Users/kyle/hadoop/bin/../lib/kfs-0.2.2.jar:/Users/kyle/hadoop/bin/../lib/log4j-1.2.15.jar:/Users/kyle/hadoop/bin/../lib/mockito-all-1.8.5.jar:/Users/kyle/hadoop/bin/../lib/oro-2.0.8.jar:/Users/kyle/hadoop/bin/../lib/servlet-api-2.5-20081211.jar:/Users/kyle/hadoop/bin/../lib/slf4j-api-1.4.3.jar:/Users/kyle/hadoop/bin/../lib/slf4j-log4j12-1.4.3.jar:/Users/kyle/hadoop/bin/../lib/xmlenc-0.52.jar:/Users/kyle/hadoop/bin/../lib/jsp-2.1/jsp-2.1.jar:/Users/kyle/hadoop/bin/../lib/jsp-2.1/jsp-api-2.1.jar 2011-09-07 15:41:37,798 INFO org.apache.zookeeper.ZooKeeper: Client environment:java.library.path=/Users/kyle/hadoop/bin/../lib/native/Mac_OS_X-x86_64-64:/tmp/hadoop-kyle/mapred/local/taskTracker/kyle/jobcache/job_201109071501_0003/attempt_201109071501_0003_m_000000_0/work 2011-09-07 15:41:37,798 INFO org.apache.zookeeper.ZooKeeper: Client environment:java.io.tmpdir=/tmp/hadoop-kyle/mapred/local/taskTracker/kyle/jobcache/job_201109071501_0003/attempt_201109071501_0003_m_000000_0/work/tmp 2011-09-07 15:41:37,798 INFO org.apache.zookeeper.ZooKeeper: Client environment:java.compiler=<NA> 2011-09-07 15:41:37,798 INFO org.apache.zookeeper.ZooKeeper: Client environment:os.name=Mac OS X 2011-09-07 15:41:37,798 INFO org.apache.zookeeper.ZooKeeper: Client environment:os.arch=x86_64 2011-09-07 15:41:37,798 INFO org.apache.zookeeper.ZooKeeper: Client environment:os.version=10.6.8 2011-09-07 15:41:37,798 INFO org.apache.zookeeper.ZooKeeper: Client environment:user.name=kyle 2011-09-07 15:41:37,798 INFO org.apache.zookeeper.ZooKeeper: Client environment:user.home=/homes/ 2011-09-07 15:41:37,798 INFO org.apache.zookeeper.ZooKeeper: Client environment:user.dir=/private/tmp/hadoop-kyle/mapred/local/taskTracker/kyle/jobcache/job_201109071501_0003/attempt_201109071501_0003_m_000000_0/work 2011-09-07 15:41:37,799 INFO org.apache.zookeeper.ZooKeeper: Initiating client connection, connectString=new-host-3.home:22181 sessionTimeout=60000 watcher=org.apache.giraph.graph.BspServiceMaster@769aba32 2011-09-07 15:41:37,810 INFO org.apache.zookeeper.ClientCnxn: Opening socket connection to server new-host-3.home/192.168.1.6:22181 2011-09-07 15:41:37,811 INFO org.apache.zookeeper.ClientCnxn: Socket connection established to new-host-3.home/192.168.1.6:22181, initiating session 2011-09-07 15:41:37,855 INFO org.apache.zookeeper.ClientCnxn: Session establishment complete on server new-host-3.home/192.168.1.6:22181, sessionid = 0x1324568e60f0000, negotiated timeout = 60000 2011-09-07 15:41:37,856 INFO org.apache.giraph.graph.BspService: process: Asynchronous connection complete. 2011-09-07 15:41:37,857 INFO org.apache.giraph.graph.GraphMapper: map: No need to do anything when not a worker 2011-09-07 15:41:37,857 INFO org.apache.giraph.graph.GraphMapper: cleanup: Starting for MASTER_ZOOKEEPER_ONLY 2011-09-07 15:41:37,907 INFO org.apache.giraph.graph.BspServiceMaster: becomeMaster: First child is '/_hadoopBsp/job_201109071501_0003/_masterElectionDir/new-host-3.home_00000000000' and my bid is '/_hadoopBsp/job_201109071501_0003/_masterElectionDir/new-host-3.home_00000000000' 2011-09-07 15:41:37,907 INFO org.apache.giraph.graph.BspServiceMaster: becomeMaster: I am now the master! 2011-09-07 15:41:37,918 INFO org.apache.giraph.graph.BspService: process: applicationAttemptChanged signaled 2011-09-07 15:41:37,926 WARN org.apache.giraph.graph.BspService: process: Unknown and unprocessed event (path=/_hadoopBsp/job_201109071501_0003/_applicationAttemptsDir/0/_superstepDir, type=NodeChildrenChanged, state=SyncConnected) 2011-09-07 15:42:10,510 INFO org.apache.giraph.graph.BspServiceMaster: checkWorkers: Only found 1 responses of 30 needed to start superstep -1. Sleeping for 30000 msecs and used 0 of 10 attempts. 2011-09-07 15:42:40,514 INFO org.apache.giraph.graph.BspServiceMaster: checkWorkers: Only found 1 responses of 30 needed to start superstep -1. Sleeping for 30000 msecs and used 1 of 10 attempts. 2011-09-07 15:43:10,519 INFO org.apache.giraph.graph.BspServiceMaster: checkWorkers: Only found 1 responses of 30 needed to start superstep -1. Sleeping for 30000 msecs and used 2 of 10 attempts. 2011-09-07 15:43:40,523 INFO org.apache.giraph.graph.BspServiceMaster: checkWorkers: Only found 1 responses of 30 needed to start superstep -1. Sleeping for 30000 msecs and used 3 of 10 attempts. 2011-09-07 15:44:10,527 INFO org.apache.giraph.graph.BspServiceMaster: checkWorkers: Only found 1 responses of 30 needed to start superstep -1. Sleeping for 30000 msecs and used 4 of 10 attempts. 2011-09-07 15:44:40,533 INFO org.apache.giraph.graph.BspServiceMaster: checkWorkers: Only found 1 responses of 30 needed to start superstep -1. Sleeping for 30000 msecs and used 5 of 10 attempts. 2011-09-07 15:45:10,537 INFO org.apache.giraph.graph.BspServiceMaster: checkWorkers: Only found 1 responses of 30 needed to start superstep -1. Sleeping for 30000 msecs and used 6 of 10 attempts. 2011-09-07 15:45:40,541 INFO org.apache.giraph.graph.BspServiceMaster: checkWorkers: Only found 1 responses of 30 needed to start superstep -1. Sleeping for 30000 msecs and used 7 of 10 attempts. 2011-09-07 15:46:10,545 INFO org.apache.giraph.graph.BspServiceMaster: checkWorkers: Only found 1 responses of 30 needed to start superstep -1. Sleeping for 30000 msecs and used 8 of 10 attempts. 2011-09-07 15:46:40,550 INFO org.apache.giraph.graph.BspServiceMaster: checkWorkers: Only found 1 responses of 30 needed to start superstep -1. Sleeping for 30000 msecs and used 9 of 10 attempts. 2011-09-07 15:46:40,550 WARN org.apache.giraph.graph.BspServiceMaster: checkWorkers: Did not receive enough processes in time (only 1 of 30 required) 2011-09-07 15:46:40,552 INFO org.apache.giraph.graph.BspServiceMaster: setJobState: {"_stateKey":"FAILED","_applicationAttemptKey":-1,"_superstepKey":-1} on superstep -1 2011-09-07 15:46:41,344 FATAL org.apache.giraph.graph.BspServiceMaster: failJob: Killing job job_201109071501_0003 2011-09-07 15:46:41,378 ERROR org.apache.giraph.graph.MasterThread: masterThread: Master algorithm failed: java.lang.NullPointerException at org.apache.giraph.graph.BspServiceMaster.createInputSplits(BspServiceMaster.java:486) at org.apache.giraph.graph.MasterThread.run(MasterThread.java:94) 2011-09-07 15:46:41,379 FATAL org.apache.giraph.graph.GraphMapper: uncaughtException: OverrideExceptionHandler on thread org.apache.giraph.graph.MasterThread, msg = java.lang.NullPointerException, exiting... java.lang.RuntimeException: java.lang.NullPointerException at org.apache.giraph.graph.MasterThread.run(MasterThread.java:177) Caused by: java.lang.NullPointerException at org.apache.giraph.graph.BspServiceMaster.createInputSplits(BspServiceMaster.java:486) at org.apache.giraph.graph.MasterThread.run(MasterThread.java:94) 2011-09-07 15:46:41,379 WARN org.apache.giraph.zk.ZooKeeperManager: onlineZooKeeperServers: Forced a shutdown hook kill of the ZooKeeper process.