git add .
git add -u

Take a look at the staged diff

git diff --cached

Then commit and push if you have a remote. 

On Jun 9, 2011, at 6:23 AM, gvim <gvi...@gmail.com> wrote:

> My use of Git on a personal project has lapsed for a couple of weeks. Files 
> have been moved around and many deleted. Haven't been using Git for that long 
> so wonder what is the state of my repository re deleted files and how to 
> clean things up. `git status' shows a lot of unstaged deletions but I can't 
> be sure it's complete.
> 
> gvim
> 
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