I think this is just a misunderstanding about how Git is working, which can be 
hard to appreciate at first.

Because Git has the Staging Area/Index (equivalent to an old style Out box for 
things that are Done but not yet filed) the act of adding the file makes it 
appear to go away.

In addition if the file simply has a change of modification dates then Git 
ignores that. As a version control system, the only date that matters is the 
date that it is 'committed' (i.e. approved) for storing in the respository. All 
other dates are transitory. This can also be unexpected, but is the norm for 
version systems (as opposed to say a Zip file).

Hope that helps in the understanding...

--
Philio
  ----- Original Message ----- 
  From: IL Ka 
  To: Git for human beings 
  Sent: Monday, November 20, 2017 2:06 PM
  Subject: [git-users] Git on Windows marks file as "modified" even it has no 
changes


  Hi all.
  I copied file from different folder over file in my repository. Contents are 
the same, only modification date differs.
  But file is marked as "changed". But when I "stage" it -- it simply 
disappears from list. 


  Modified:
  >git status | findstr flake8

          modified:   flake8_v3_plugin.py




  No diff:
  >git diff flake8_v3_plugin.py
  warning: LF will be replaced by CRLF in 
python/helpers/pycharm/teamcity/flake8_v3_plugin.py.
  The file will have its original line endings in your working directory.


  And after staging
  >git stage flake8_v3_plugin.py
  warning: LF will be replaced by CRLF in 
python/helpers/pycharm/teamcity/flake8_v3_plugin.py.
  The file will have its original line endings in your working directory.


  It disappeared
  >git status | findstr flake8


  Some kind of known issue, or should I report bug?


  Ilya.

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