Originally I had this problem in gentoo and assumed in the end it's
likely due to my specific configuration.
However recently I switched to nixos and am still experiencing it.

I've search again if I can find anything and lo and behold, it's
already fixed in the *windows* version of git-gui...

issue thread: https://github.com/git-for-windows/git/issues/1012
commit: 
https://github.com/git-for-windows/git/commit/1c4d4e7cbcf404c168df5537d55e9afd57f2b01b

I applied it locally to git-2.15.0 and can confirm it fixed the problem for me.
If you need any more info/help from me, or would like me to test
anything, feel free to ask.

On 12/5/16, Timon <[email protected]> wrote:
> On 12/4/16, David Aguilar <[email protected]> wrote:
>> On Sun, Dec 04, 2016 at 05:36:46PM +0100, Timon wrote:
>>> This is a regression in git 2.11.0 (version 2.10.2 is fine).
>>>
>>> In git-gui I select multiple files in the Unstaged Changes (using
>>> shift+click) and press ctrl+t to stage them. Then only one files gets
>>> staged instead of all of the selected files.
>>> The same happens when unstaging files.
>>>
>>> Git-cola also exhibits the same behavior. Although there I could stage
>>> multiple files if I used a popup menu instead of the keyboard shortcut
>>> (I'm guessing it goes through a different code path?).
>>
>> Can you elaborate a bit?
>>
>> I just tested git-cola with Git 2.11 and it worked fine for me.
>> I selected several files and used the Ctrl+s hotkey to stage the
>> selected files.  They all got staged.
>>
>> If you have a test repo, or reproduction recipe, I'd be curious
>> to try it out.
>> --
>> David
>>
>
> Can you try with git gui?
> Though I guess it's probably specific to my distro or configuration.
> I'm running 64bit gentoo with:
> linux 4.8.12
> gcc 5.4.0
> glibc 2.23-r3
> tk 8.6.6
> gettext 0.19.8.1
> openssl 1.0.2j
> Not sure if that's helpful though.
>

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