we are using git since may and all is working fine for all of us
  (almost 20 people) on our workstations.  However, when we clone our
  repositories to the cluster, only and only there
  we are having many problems similiar to this post:

What filesystem tests have you run on lustre?  I would run every test
you can find, and lustre should have a robust test suite.  It's really
hard to be certain, but given how many filesystems git is used with,
your experience points to a lustre bug.

I would also suggest using ktrace/ktruss/strace and perhaps poring over
the logs to see if you can spot any bad behavior.

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