(Apologies, I accidentally sent this as a reply to the original post, instead 
of your email. I'm new to this!)

> does your test involve unusual file systems, funny characters in filenames, 
> ..? You are on some sort of Linux, right?

I'm running macOS 10.13.4. I don't have any unusual file system setup, as far 
as I'm aware. The filename in my test case is simply `foo`.

I tried the steps you suggested: on git 2.17.0, saving the patch, editing it, 
and applying it, and it succeeded.

> should now show bar2 in the first hunk and bar1 in the second hunk, just like 
> your edited test.patch.

That was the case, although I had to remove the `--check` flag from `git apply`.

> How comfortable are you with building Git from the sources?

I've never done it before, but I assume it's well documented, so I'm willing to 
give it a shot!

Happy to try any steps to debug this! Although I'm a bit surprised no-one else 
can reproduce it with the same version of Git, which makes it seem less likely 
this could be a bug, and more likely it's something in my setup.

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