When the .gitmodules file is not available in the working tree, try
using HEAD:.gitmodules from the current branch. This covers the case
when the file is part of the repository but for some reason it is not
checked out, for example because of a sparse checkout.

This makes it possible to use at least the 'git submodule' commands
which *read* the gitmodules configuration file without fully populating
the working tree.

Writing to .gitmodules will still require that the file is checked out,
so check for that before calling config_set_in_gitmodules_file_gently.

Add a similar check also in git-submodule.sh::cmd_add() to anticipate
the eventual failure of the "git submodule add" command when .gitmodules
is not safely writeable; this prevents the command from leaving the
repository in a spurious state (e.g. the submodule repository was cloned
but .gitmodules was not updated because
config_set_in_gitmodules_file_gently failed).

Finally, add t7416-submodule-sparse-gitmodules.sh to verify that reading
from .gitmodules succeeds and that writing to it fails when the file is
not checked out.

Signed-off-by: Antonio Ospite <a...@ao2.it>
---

Maybe the check in config_set_in_gitmodules_file_gently and
git-submodule.sh::cmd_add() can share some code:

  - add an is_gitmodules_safely_writeable() helper
  - expose a "submodule--helper config --is-safely-writeable" subcommand

But for now I preferred to keep the changes with v2 to a minimum to avoid
blocking the series.

If adding a new helper is preferred I can do a v4 or send a follow-up patch.

Thank you,
   Antonio


 builtin/submodule--helper.c            | 17 ++++-
 cache.h                                |  1 +
 git-submodule.sh                       |  7 ++
 submodule-config.c                     | 16 ++++-
 t/t7416-submodule-sparse-gitmodules.sh | 90 ++++++++++++++++++++++++++
 5 files changed, 128 insertions(+), 3 deletions(-)
 create mode 100755 t/t7416-submodule-sparse-gitmodules.sh

diff --git a/builtin/submodule--helper.c b/builtin/submodule--helper.c
index 7481d03b63..c0370a756b 100644
--- a/builtin/submodule--helper.c
+++ b/builtin/submodule--helper.c
@@ -2036,8 +2036,23 @@ static int module_config(int argc, const char **argv, 
const char *prefix)
                return print_config_from_gitmodules(argv[1]);
 
        /* Equivalent to ACTION_SET in builtin/config.c */
-       if (argc == 3)
+       if (argc == 3) {
+               struct object_id oid;
+
+               /*
+                * If the .gitmodules file is not in the working tree but it
+                * is in the current branch, stop, as writing new values (and
+                * staging them) would blindly overwrite ALL the old content.
+                *
+                * This check still makes it possible to create a brand new
+                * .gitmodules when it is safe to do so: when neither
+                * GITMODULES_FILE nor GITMODULES_HEAD exist.
+                */
+               if (!file_exists(GITMODULES_FILE) && get_oid(GITMODULES_HEAD, 
&oid) >= 0)
+                       die(_("please make sure that the .gitmodules file in 
the current branch is checked out"));
+
                return config_set_in_gitmodules_file_gently(argv[1], argv[2]);
+       }
 
        die("submodule--helper config takes 1 or 2 arguments: name [value]");
 }
diff --git a/cache.h b/cache.h
index 8dc7134f00..900f9e09e5 100644
--- a/cache.h
+++ b/cache.h
@@ -486,6 +486,7 @@ static inline enum object_type object_type(unsigned int 
mode)
 #define INFOATTRIBUTES_FILE "info/attributes"
 #define ATTRIBUTE_MACRO_PREFIX "[attr]"
 #define GITMODULES_FILE ".gitmodules"
+#define GITMODULES_HEAD "HEAD:.gitmodules"
 #define GIT_NOTES_REF_ENVIRONMENT "GIT_NOTES_REF"
 #define GIT_NOTES_DEFAULT_REF "refs/notes/commits"
 #define GIT_NOTES_DISPLAY_REF_ENVIRONMENT "GIT_NOTES_DISPLAY_REF"
diff --git a/git-submodule.sh b/git-submodule.sh
index ff258e2e8c..b1cb187227 100755
--- a/git-submodule.sh
+++ b/git-submodule.sh
@@ -159,6 +159,13 @@ cmd_add()
                shift
        done
 
+       # For more details about this check, see
+       # builtin/submodule--helper.c::module_config()
+       if test ! -e .gitmodules && git cat-file -e HEAD:.gitmodules > 
/dev/null 2>&1
+       then
+                die "$(eval_gettext "please make sure that the .gitmodules 
file in the current branch is checked out")"
+       fi
+
        if test -n "$reference_path"
        then
                is_absolute_path "$reference_path" ||
diff --git a/submodule-config.c b/submodule-config.c
index b7ef055c63..088dabb56f 100644
--- a/submodule-config.c
+++ b/submodule-config.c
@@ -1,4 +1,5 @@
 #include "cache.h"
+#include "dir.h"
 #include "repository.h"
 #include "config.h"
 #include "submodule-config.h"
@@ -603,8 +604,19 @@ static void submodule_cache_check_init(struct repository 
*repo)
 static void config_from_gitmodules(config_fn_t fn, struct repository *repo, 
void *data)
 {
        if (repo->worktree) {
-               char *file = repo_worktree_path(repo, GITMODULES_FILE);
-               git_config_from_file(fn, file, data);
+               struct git_config_source config_source = { 0 };
+               const struct config_options opts = { 0 };
+               struct object_id oid;
+               char *file;
+
+               file = repo_worktree_path(repo, GITMODULES_FILE);
+               if (file_exists(file))
+                       config_source.file = file;
+               else if (get_oid(GITMODULES_HEAD, &oid) >= 0)
+                       config_source.blob = GITMODULES_HEAD;
+
+               config_with_options(fn, data, &config_source, &opts);
+
                free(file);
        }
 }
diff --git a/t/t7416-submodule-sparse-gitmodules.sh 
b/t/t7416-submodule-sparse-gitmodules.sh
new file mode 100755
index 0000000000..5341e9b012
--- /dev/null
+++ b/t/t7416-submodule-sparse-gitmodules.sh
@@ -0,0 +1,90 @@
+#!/bin/sh
+#
+# Copyright (C) 2018  Antonio Ospite <a...@ao2.it>
+#
+
+test_description='Test reading/writing .gitmodules when not in the working tree
+
+This test verifies that, when .gitmodules is in the current branch but is not
+in the working tree reading from it still works but writing to it does not.
+
+The test setup uses a sparse checkout, however the same scenario can be set up
+also by committing .gitmodules and then just removing it from the filesystem.
+'
+
+. ./test-lib.sh
+
+test_expect_success 'sparse checkout setup which hides .gitmodules' '
+       echo file > file &&
+       git add file &&
+       test_tick &&
+       git commit -m upstream &&
+       git clone . super &&
+       git clone super submodule &&
+       git clone super new_submodule &&
+       (cd super &&
+               git submodule add ../submodule &&
+               test_tick &&
+               git commit -m submodule &&
+               cat >.git/info/sparse-checkout <<\EOF &&
+/*
+!/.gitmodules
+EOF
+               git config core.sparsecheckout true &&
+               git read-tree -m -u HEAD &&
+               test_path_is_missing .gitmodules
+       )
+'
+
+test_expect_success 'reading gitmodules config file when it is not checked 
out' '
+       (cd super &&
+               echo "../submodule" >expected &&
+               git submodule--helper config submodule.submodule.url >actual &&
+               test_cmp expected actual
+       )
+'
+
+test_expect_success 'not writing gitmodules config file when it is not checked 
out' '
+       (cd super &&
+               test_must_fail git submodule--helper config 
submodule.submodule.url newurl
+       )
+'
+
+test_expect_success 'initialising submodule when the gitmodules config is not 
checked out' '
+       (cd super &&
+               git submodule init
+       )
+'
+
+test_expect_success 'showing submodule summary when the gitmodules config is 
not checked out' '
+       (cd super &&
+               git submodule summary
+       )
+'
+
+test_expect_success 'updating submodule when the gitmodules config is not 
checked out' '
+       (cd submodule &&
+               echo file2 >file2 &&
+               git add file2 &&
+               git commit -m "add file2 to submodule"
+       ) &&
+       (cd super &&
+               git submodule update
+       )
+'
+
+test_expect_success 'not adding submodules when the gitmodules config is not 
checked out' '
+       (cd super &&
+               test_must_fail git submodule add ../new_submodule
+       )
+'
+
+# This test checks that the previous "git submodule add" did not leave the
+# repository in a spurious state when it failed.
+test_expect_success 'init submodule still works even after the previous add 
failed' '
+       (cd super &&
+               git submodule init
+       )
+'
+
+test_done
-- 
2.18.0

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