Initially reported for GFW on version 2.20.1, I have tested with Linux Mint 
Mate 19.1 Tessa which by default uses git version 2.17.1

It produces a config file with the relevant submodule entries looking like this:

----------------
[submodule]
        active = .

[submodule "Submodule/Path"]
        url = https://github.com/organization/submodule.git
----------------

Instead of that, which is produced by manually initializing a submodule anytime 
after cloning:

----------------
 [submodule "Submodule/Path"]
        active = true
        url = https://github.com/organization/submodule.git
----------------

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