Thanks for taking a look.
>> > So it does feel like a bug to me: why are files with ^S set remaining in
>> > working version after
>> > git read-tree -mu HEAD
>> > ?
>> I don't know. Maybe the bits are set, but then the remove operation
>> fails (silently). I tried to reproduce on Linux without success.
I also tried to make a small repo to reproduce and failed.
I will try to strip and send ... might take a little while to get to the
point where it still happens but there's no work related stuff in there
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