The problem only occurs in files with lots of lines - the largest line number is used to determine the width of this area as can be seen by starting with a window with one line in it and duplicating it 1000 times (very easy to do in Geany with Ctrl-D). In files that do have a large number of lines say 100,001 lines, then most lines will have at least one redundant space and if one tends to work at the top of the file most of the time there are 4 redundant spaces in this area.
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