Ok, I can explain it, its not a bug, just a confusing interaction between 
settings.

The `line break column` setting is system wide or project and `long line 
marker` setting is system wide, but reflow switches between `line break column` 
and `long line marker column` depending on the per-document `line breaking` 
setting (this behaviour is documented).  

Since I had a project open, those documents with `line breaking` on ignored the 
changes to system settings of `line breaking column` and `long line marker 
column` and used the unchanged project value of `line breaking column` (but I 
was unaware at the time that it was a project setting), but closing and 
reopening documents turned off theper  document `line breaking` setting and 
made reflow in those documents use the `long line marker column` system setting 
instead of the `line breaking` project setting.

Very confusing, the `preferences` dialog really should indicate when a setting 
is being overridden by a project setting, like the `set build commands` dialog 
does. #1363 opened for that enhancement.

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