What GTK and Glib versions are you using? (see Geany `menu->help->debug 
messages` near the top).

You can turn gio file operations off in 
`edit->preferences->various->use_gio_unsafe_file_saving` which despite the name 
also turns off GIO reading.

Geany then uses the Glib `g_file_get_contents()` and `g_file_set_contents()` 
which don't use GIO unless its changed.

You can also turn off the `g_file_set_contents()` (which does a rename and 
other stuff, see my post above) and just use C output by  
`edit->preferences->various->use_atomic_file_saving`.

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