>From [the Manual](https://www.geany.org/manual/current/index.html):

> The user preferences file geany.conf holds settings for all the items 
> configured in the preferences dialog. This file should not be edited while 
> Geany is running as the file will be overwritten when the preferences in 
> Geany are changed or Geany is quit.

In this particular case you can just set the preference from the GUI under 
Preferences->Various.

If you really really want to edit the config file without using another editor, 
run Geany with a separate/temporary configuration directory (ex. `geany -c 
/tmp/deleteme`) and use that to edit the original config file from the main 
configuration directory.

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