I still think reading the source files is not the problem. Tag parsing works 
fine on Windows, for LF and CRLF source files.

Anyway, I added some code in 
https://github.com/geany/geany/blob/c5303c9499bb6f0d632e0ca5b42e15f84d64ac52/ctags/main/read.c#L845
 to print the return value of `mio_gets()`.

The source file content I used for testing, saved with CRLF line endings:
static void test_function(char *const str)
{
        printf("%s", str);
}

The hex representation of the `mio_gets()` result after the file is *opened 
from disk* (spaces and line breaks added by me):
73 74 61 74 69 63 20 76 6f 69 64 20 74 65 73 74 5f 66 75 6e 63 74 69 6f 6e 28 
63 68 61 72 20 2a 63 6f 6e 73 74 20 73 74 72 29 0d 0a
7b 0d 0a
09 70 72 69 6e 74 66 28 22 25 73 22 2c 20 73 74 72 29 3b 0d 0a
7d 0d 0a

The hex representation of the `mio_gets()` result after the file was edited in 
Geany (spaces and line breaks added by me):
73 74 61 74 69 63 20 76 6f 69 64 20 74 65 73 74 5f 66 75 6e 63 74 69 6f 6e 28 
63 68 61 72 20 2a 63 6f 6e 73 74 20 73 74 72 29 0d 0a
7b 0d 0a
09 70 72 69 6e 74 66 28 22 25 73 22 2c 20 73 74 72 29 3b 0d 0a
7d 0d 0a

As you can see, the read lines contain the CRLFs.

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