> Do the dropdown search and replace lists work between sessions to be accessed?

Not totally sure what you mean, if you mean the dropdown lists on the entrys in 
the search/replace dialog get saved and restored when Geany is shutdown and 
restarted, then no.

> > Is v2.1 using a single colorschema folder for user and superuser?

> There is the system colorscheme directory (usually 
> /usr/share/geany/colorschemes/, or the same under /usr/local/ if you 
> installed manually)

Or `$prefix/geany/colorschemes` if you built it somewhere else

> Unrelated note: I advise against running Geany as root.

+100000000000000000000000000000000  Ubuntu (and descendents) broken sudo screws 
up which $home is used, so it depends on which distro you use what the answer 
to your question is, but its not different to 2.0 if thats what you mean.

> Can I disable bracket highlights? Where?

See https://github.com/geany/geany/issues/3555

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