> I started getting it in [#4205](https://github.com/geany/geany/pull/4205) and 
> now it fails also for the merged 
> [#4095](https://github.com/geany/geany/pull/4095) in master.

If you pushed to those branches multiple times, the subsequent builds used 
cached objects; CodeQL was not built to cope with those: 

> Since CodeQL observes the activity of the compiler to understand the data 
> flows in a repository, CodeQL requires a complete build to take place in 
> order to perform analysis.
>
> <https://docs.github.com/en/code-security/code-scanning/troubleshooting-code-scanning/no-source-code-seen-during-build>


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