HeinzStuecke commented on issue #13425: URL: https://github.com/apache/arrow/issues/13425#issuecomment-1164378109
Okidoki, so I did the following: ``` wget https://github.com/Kitware/CMake/releases/download/v3.23.2/cmake-3.23.2-linux-x86_64.tar.gz gunzip cmake-3.23.2-linux-x86_64.tar.gz export CMAKE=/cmake-3.23.2-linux-x86_64.tar cmake --version ``` Which still returns `cmake version 2.8.12.2` and I seem to get the same error message when installing `arrow` ```txt Using username "username". [email protected]'s password: Access denied [email protected]'s password: Access denied [email protected]'s password: Access denied [email protected]'s password: Last login: Thu Jun 23 13:23:12 2022 from see120.see.university.org +------------------------------------------------------------------------------+ | Dear cluster users, | | please consider following our announcements at | | https://isis.university.org/mod/forum/view.php?id=556432 | | | | You may give us feedback to improve our service for you at | | https://isis.university.org/mod/questionnaire/view.php?id=718187 | | | | In order to enrol to the course use the enrolment key 'rechenknecht' and | | your UNIVERSITY account data to login, if necessary. | +------------------------------------------------------------------------------+ /usr/bin/id: cannot find name for group ID 1242206 [username@frontend01 ~]$ cmake --version cmake version 2.8.12.2 [username@frontend01 ~]$ ^C [username@frontend01 ~]$ wget wget: missing URL Usage: wget [OPTION]... [URL]... Try `wget --help' for more options. [username@frontend01 ~]$ wget https://github.com/Kitware/CMake/releases/download/v3.23.2/cmake-3.23.2-linux-x86_64.tar.gz --2022-06-23 14:44:19-- https://github.com/Kitware/CMake/releases/download/v3.23.2/cmake-3.23.2-linux-x86_64.tar.gz Resolving github.com (github.com)... 140.82.121.4 Connecting to github.com (github.com)|140.82.121.4|:443... connected. HTTP request sent, awaiting response... 302 Found Location: https://objects.githubusercontent.com/github-production-release-asset-2e65be/537699/6684c7d5-b152-4b45-8e09-ca27803d17b8?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20220623%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20220623T124420Z&X-Amz-Expires=300&X-Amz-Signature=2e1dbbf293c7e69c53aa4a352d3f8d519311b6e1965409dbc7d60abf5ce0113d&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=537699&response-content-disposition=attachment%3B%20filename%3Dcmake-3.23.2-linux-x86_64.tar.gz&response-content-type=application%2Foctet-stream [following] --2022-06-23 14:44:20-- https://objects.githubusercontent.com/github-production-release-asset-2e65be/537699/6684c7d5-b152-4b45-8e09-ca27803d17b8?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20220623%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20220623T124420Z&X-Amz-Expires=300&X-Amz-Signature=2e1dbbf293c7e69c53aa4a352d3f8d519311b6e1965409dbc7d60abf5ce0113d&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=537699&response-content-disposition=attachment%3B%20filename%3Dcmake-3.23.2-linux-x86_64.tar.gz&response-content-type=application%2Foctet-stream Resolving objects.githubusercontent.com (objects.githubusercontent.com)... 185.199.109.133, 185.199.110.133, 185.199.108.133, ... Connecting to objects.githubusercontent.com (objects.githubusercontent.com)|185.199.109.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 46018921 (44M) [application/octet-stream] Saving to: ‘cmake-3.23.2-linux-x86_64.tar.gz’ 100%[======================================>] 46,018,921 15.5MB/s in 2.8s 2022-06-23 14:44:23 (15.5 MB/s) - ‘cmake-3.23.2-linux-x86_64.tar.gz’ saved [46018921/46018921] [username@frontend01 ~]$ untar cmake-3.23.2-linux-x86_64.tar.gz bash: untar: command not found... [username@frontend01 ~]$ gunzip cmake-3.23.2-linux-x86_64.tar.gz [username@frontend01 ~]$ list bash: list: command not found... [username@frontend01 ~]$ -- list bash: --: command not found... [username@frontend01 ~]$ l-- bash: l--: command not found... [username@frontend01 ~]$ --l bash: --l: command not found... [username@frontend01 ~]$ getwd bash: getwd: command not found... [username@frontend01 ~]$ pwd /home/users/b/username [username@frontend01 ~]$ ls cmake-3.23.2-linux-x86_64.tar my_arrow_pkg.tar.gz R slurm-20999955.out [username@frontend01 ~]$ dir cmake-3.23.2-linux-x86_64.tar my_arrow_pkg.tar.gz R slurm-20999955.out [username@frontend01 ~]$ export CMAKE=/path/to/bin/cmake [username@frontend01 ~]$ module load R/3.6.1 [username@frontend01 ~]$ R WARNING: ignoring environment value of R_HOME R version 3.6.1 (2019-07-05) -- "Action of the Toes" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > install.packages(arrow) Error in install.packages(arrow) : object 'arrow' not found > install.packages("arrow") Installing package into ‘/beegfs/home/users/b/username/R/x86_64-pc-linux-gnu-library/3.6’ (as ‘lib’ is unspecified) --- Please select a CRAN mirror for use in this session --- Secure CRAN mirrors 1: 0-Cloud [https] 2: Australia (Canberra) [https] 3: Australia (Melbourne 1) [https] 4: Australia (Melbourne 2) [https] 5: Australia (Perth) [https] 6: Austria [https] 7: Belgium (Brussels) [https] 8: Brazil (PR) [https] 9: Brazil (RJ) [https] 10: Brazil (SP 1) [https] 11: Brazil (SP 2) [https] 12: Bulgaria [https] 13: Canada (MB) [https] 14: Canada (ON 3) [https] 15: Chile (Santiago) [https] 16: China (Beijing 2) [https] 17: China (Beijing 3) [https] 18: China (Hefei) [https] 19: China (Hong Kong) [https] 20: China (Guangzhou) [https] 21: China (Lanzhou) [https] 22: China (Nanjing) [https] 23: China (Shanghai 2) [https] 24: China (Shenzhen) [https] 25: Colombia (Cali) [https] 26: Costa Rica [https] 27: Cyprus [https] 28: Czech Republic [https] 29: Denmark [https] 30: East Asia [https] 31: Ecuador (Cuenca) [https] 32: Ecuador (Quito) [https] 33: Estonia [https] 34: France (Lyon 1) [https] 35: France (Lyon 2) [https] 36: France (Marseille) [https] 37: France (Paris 1) [https] 38: Germany (Erlangen) [https] 39: Germany (Leipzig) [https] 40: Germany (Göttingen) [https] 41: Germany (Münster) [https] 42: Germany (Regensburg) [https] 43: Greece [https] 44: Hungary [https] 45: Iceland [https] 46: India [https] 47: Indonesia (Jakarta) [https] 48: Iran (Mashhad) [https] 49: Italy (Milano) [https] 50: Italy (Padua) [https] 51: Japan (Tokyo) [https] 52: Korea (Gyeongsan-si) [https] 53: Korea (Seoul 1) [https] 54: Korea (Ulsan) [https] 55: Malaysia [https] 56: Mexico (Mexico City) [https] 57: Morocco [https] 58: Netherlands [https] 59: New Zealand [https] 60: Norway [https] 61: South Africa (Johannesburg) [https] 62: Spain (A Coruña) [https] 63: Spain (Madrid) [https] 64: Sweden (Borås) [https] 65: Sweden (Umeå) [https] 66: Switzerland [https] 67: Taiwan (Taipei) [https] 68: Turkey (Denizli) [https] 69: Turkey (Istanbul) [https] 70: Turkey (Mersin) [https] 71: UK (Bristol) [https] 72: UK (London 1) [https] 73: USA (IA) [https] 74: USA (KS) [https] 75: USA (MI) [https] 76: USA (OH) [https] 77: USA (OR) [https] 78: USA (TN) [https] 79: USA (TX 1) [https] 80: Uruguay [https] 81: (other mirrors) Selection: 56 trying URL 'https://cran.itam.mx/src/contrib/arrow_8.0.0.tar.gz' Content type 'application/x-gzip' length 4796875 bytes (4.6 MB) ================================================== downloaded 4.6 MB * installing *source* package ‘arrow’ ... ** package ‘arrow’ successfully unpacked and MD5 sums checked ** using staged installation *** Found local C++ source: 'tools/cpp' *** Building libarrow from source For a faster, more complete installation, set the environment variable NOT_CRAN=true before installing See install vignette for details: https://cran.r-project.org/web/packages/arrow/vignettes/install.html **** arrow **** Error building Arrow C++. Re-run with ARROW_R_DEV=true for debug information. ------------------------- NOTE --------------------------- There was an issue preparing the Arrow C++ libraries. See https://arrow.apache.org/docs/r/articles/install.html --------------------------------------------------------- ERROR: configuration failed for package ‘arrow’ * removing ‘/beegfs/home/users/b/username/R/x86_64-pc-linux-gnu-library/3.6/arrow’ The downloaded source packages are in ‘/tmp/Rtmpsp8zid/downloaded_packages’ Warning message: In install.packages("arrow") : installation of package ‘arrow’ had non-zero exit status > Using username "username". [username@frontend01 ~]$ cmake --version cmake version 2.8.12.2 [username@frontend01 ~]$ ^C [username@frontend01 ~]$ wget wget: missing URL Error: unexpected symbol in "Using username" > [email protected]'s password: + Access denied + [email protected]'s password: Error: unexpected string constant in: "Access denied [email protected]'" > Access denied Error: unexpected symbol in "Access denied" > [email protected]'s password: --2022-06-23 14:44:19-- https://github.com+ > quit() Save workspace image? [y/n/c]: n [username@frontend01 ~]$ export CMAKE=/my_arrow_pkg.tar.gz [username@frontend01 ~]$ cmake --version cmake version 2.8.12.2 [username@frontend01 ~]$ export CMAKE=/my_arrow_pkg.tar.gz [username@frontend01 ~]$ ^C [username@frontend01 ~]$ ^C [username@frontend01 ~]$ dir cmake-3.23.2-linux-x86_64.tar my_arrow_pkg.tar.gz R slurm-20999955.out [username@frontend01 ~]$ export CMAKE=/cmake-3.23.2-linux-x86_64.tar [username@frontend01 ~]$ cmake --version cmake version 2.8.12.2 [username@frontend01 ~]$ ^C [username@frontend01 ~]$ ^C [username@frontend01 ~]$ R WARNING: ignoring environment value of R_HOME R version 3.6.1 (2019-07-05) -- "Action of the Toes" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > install.packages("arrow") Installing package into ‘/beegfs/home/users/b/username/R/x86_64-pc-linux-gnu-library/3.6’ (as ‘lib’ is unspecified) --- Please select a CRAN mirror for use in this session --- Secure CRAN mirrors 1: 0-Cloud [https] 2: Australia (Canberra) [https] 3: Australia (Melbourne 1) [https] 4: Australia (Melbourne 2) [https] 5: Australia (Perth) [https] 6: Austria [https] 7: Belgium (Brussels) [https] 8: Brazil (PR) [https] 9: Brazil (RJ) [https] 10: Brazil (SP 1) [https] 11: Brazil (SP 2) [https] 12: Bulgaria [https] 13: Canada (MB) [https] 14: Canada (ON 3) [https] 15: Chile (Santiago) [https] 16: China (Beijing 2) [https] 17: China (Beijing 3) [https] 18: China (Hefei) [https] 19: China (Hong Kong) [https] 20: China (Guangzhou) [https] 21: China (Lanzhou) [https] 22: China (Nanjing) [https] 23: China (Shanghai 2) [https] 24: China (Shenzhen) [https] 25: Colombia (Cali) [https] 26: Costa Rica [https] 27: Cyprus [https] 28: Czech Republic [https] 29: Denmark [https] 30: East Asia [https] 31: Ecuador (Cuenca) [https] 32: Ecuador (Quito) [https] 33: Estonia [https] 34: France (Lyon 1) [https] 35: France (Lyon 2) [https] 36: France (Marseille) [https] 37: France (Paris 1) [https] 38: Germany (Erlangen) [https] 39: Germany (Leipzig) [https] 40: Germany (Göttingen) [https] 41: Germany (Münster) [https] 42: Germany (Regensburg) [https] 43: Greece [https] 44: Hungary [https] 45: Iceland [https] 46: India [https] 47: Indonesia (Jakarta) [https] 48: Iran (Mashhad) [https] 49: Italy (Milano) [https] 50: Italy (Padua) [https] 51: Japan (Tokyo) [https] 52: Korea (Gyeongsan-si) [https] 53: Korea (Seoul 1) [https] 54: Korea (Ulsan) [https] 55: Malaysia [https] 56: Mexico (Mexico City) [https] 57: Morocco [https] 58: Netherlands [https] 59: New Zealand [https] 60: Norway [https] 61: South Africa (Johannesburg) [https] 62: Spain (A Coruña) [https] 63: Spain (Madrid) [https] 64: Sweden (Borås) [https] 65: Sweden (Umeå) [https] 66: Switzerland [https] 67: Taiwan (Taipei) [https] 68: Turkey (Denizli) [https] 69: Turkey (Istanbul) [https] 70: Turkey (Mersin) [https] 71: UK (Bristol) [https] 72: UK (London 1) [https] 73: USA (IA) [https] 74: USA (KS) [https] 75: USA (MI) [https] 76: USA (OH) [https] 77: USA (OR) [https] 78: USA (TN) [https] 79: USA (TX 1) [https] 80: Uruguay [https] 81: (other mirrors) Selection: 5 trying URL 'https://cran.curtin.edu.au/src/contrib/arrow_8.0.0.tar.gz' Content type 'application/x-gzip' length 4796875 bytes (4.6 MB) ================================================== downloaded 4.6 MB * installing *source* package ‘arrow’ ... ** package ‘arrow’ successfully unpacked and MD5 sums checked ** using staged installation *** Found local C++ source: 'tools/cpp' *** Building libarrow from source For a faster, more complete installation, set the environment variable NOT_CRAN=true before installing See install vignette for details: https://cran.r-project.org/web/packages/arrow/vignettes/install.html **** arrow **** Error building Arrow C++. Re-run with ARROW_R_DEV=true for debug information. ------------------------- NOTE --------------------------- There was an issue preparing the Arrow C++ libraries. See https://arrow.apache.org/docs/r/articles/install.html --------------------------------------------------------- ERROR: configuration failed for package ‘arrow’ * removing ‘/beegfs/home/users/b/username/R/x86_64-pc-linux-gnu-library/3.6/arrow’ The downloaded source packages are in ‘/tmp/Rtmpt8stMG/downloaded_packages’ Warning message: In install.packages("arrow") : installation of package ‘arrow’ had non-zero exit status > ``` -- This is an automated message from the Apache Git Service. To respond to the message, please log on to GitHub and use the URL above to go to the specific comment. To unsubscribe, e-mail: [email protected] For queries about this service, please contact Infrastructure at: [email protected]
