orgadish commented on issue #38033:
URL: https://github.com/apache/arrow/issues/38033#issuecomment-1758708440
@amoeba Here is the output using `ARROW_RDEV=TRUE`:
```
> Sys.setenv("ARROW_R_DEV"=TRUE) # This gives us more information
>
> devtools::load_all()
ℹ Loading arrow
ℹ Re-compiling arrow (debug build)
── R CMD INSTALL
──────────────────────────────────────────────────────────────────────────
─ installing *source* package ‘arrow’ ...
** using staged installation
*** Generating code with data-raw/codegen.R
*** > 542 functions decorated with
[[arrow|acero|dataset|substrait|parquet|s3|gcs|json::export]]
*** > `src/arrowExports.cpp` not modified
*** > `R/arrowExports.R` not modified
*** Found libcurl and OpenSSL >= 3.0.0
trying URL
'https://nightlies.apache.org/arrow/r/libarrow/bin/darwin-x86_64-openssl-3.0/arrow-13.0.0.9000.zip'
Error in download.file(from_url, to_file, quiet = hush) :
cannot open URL
'https://nightlies.apache.org/arrow/r/libarrow/bin/darwin-x86_64-openssl-3.0/arrow-13.0.0.9000.zip'
*** Downloading libarrow binary failed for version 13.0.0.9000
(darwin-x86_64-openssl-3.0)
at
https://nightlies.apache.org/arrow/r/libarrow/bin/darwin-x86_64-openssl-3.0/arrow-13.0.0.9000.zip
*** Found local C++ source: '../cpp'
*** Building libarrow from source
For build options and troubleshooting, see the install guide:
https://arrow.apache.org/docs/r/articles/install.html
*** Building with MAKEFLAGS= -j2
**** cmake: /usr/local/bin/cmake
**** pkg-config not installed, setting ARROW_DEPENDENCY_SOURCE=BUNDLED
**** arrow with SOURCE_DIR='../cpp'
BUILD_DIR='/var/folders/gh/kkjkl7md3ml943xf33hqg6540000gp/T//Rtmp8N6ErB/file4a9f170eb101'
DEST_DIR='libarrow/arrow-13.0.0.9000' CMAKE='/usr/local/bin/cmake'
EXTRA_CMAKE_FLAGS='' CC='/usr/local/gfortran/bin/gcc -fopenmp' CXX='clang++
-arch x86_64 -std=gnu++17' LDFLAGS='-L/usr/local/gfortran/lib
-Wl,-rpath,/usr/local/gfortran/lib' N_JOBS='2'
ARROW_DEPENDENCY_SOURCE='BUNDLED' ARROW_S3='OFF' ARROW_GCS='OFF'
++ pwd
+ : /Users/orgadish/Documents/GitHub/arrow/r
+ : ../cpp
+ :
/var/folders/gh/kkjkl7md3ml943xf33hqg6540000gp/T//Rtmp8N6ErB/file4a9f170eb101
+ : libarrow/arrow-13.0.0.9000
+ : /usr/local/bin/cmake
++ cd ../cpp
++ pwd
+ SOURCE_DIR=/Users/orgadish/Documents/GitHub/arrow/cpp
++ mkdir -p libarrow/arrow-13.0.0.9000
++ cd libarrow/arrow-13.0.0.9000
++ pwd
+
DEST_DIR=/Users/orgadish/Documents/GitHub/arrow/r/libarrow/arrow-13.0.0.9000
+ '[' 2 = '' ']'
+ '[' '' '!=' '' ']'
+ '[' '' = false ']'
+ ARROW_DEFAULT_PARAM=OFF
+ case "$CXX" in
+ mkdir -p
/var/folders/gh/kkjkl7md3ml943xf33hqg6540000gp/T//Rtmp8N6ErB/file4a9f170eb101
+ pushd
/var/folders/gh/kkjkl7md3ml943xf33hqg6540000gp/T//Rtmp8N6ErB/file4a9f170eb101
/var/folders/gh/kkjkl7md3ml943xf33hqg6540000gp/T/Rtmp8N6ErB/file4a9f170eb101
~/Documents/GitHub/arrow/r
+ /usr/local/bin/cmake -DARROW_BOOST_USE_SHARED=OFF
-DARROW_BUILD_TESTS=OFF -DARROW_BUILD_SHARED=OFF -DARROW_BUILD_STATIC=ON
-DARROW_ACERO=ON -DARROW_COMPUTE=ON -DARROW_CSV=ON -DARROW_DATASET=ON
-DARROW_DEPENDENCY_SOURCE=BUNDLED -DAWSSDK_SOURCE= -DARROW_FILESYSTEM=ON
-DARROW_GCS=OFF -DARROW_JEMALLOC=OFF -DARROW_MIMALLOC=ON -DARROW_JSON=ON
-DARROW_PARQUET=ON -DARROW_S3=OFF -DARROW_WITH_BROTLI=OFF -DARROW_WITH_BZ2=OFF
-DARROW_WITH_LZ4=ON -DARROW_WITH_RE2=ON -DARROW_WITH_SNAPPY=ON
-DARROW_WITH_UTF8PROC=ON -DARROW_WITH_ZLIB=OFF -DARROW_WITH_ZSTD=OFF
-DARROW_VERBOSE_THIRDPARTY_BUILD=OFF -DCMAKE_BUILD_TYPE=Release
-DCMAKE_FIND_DEBUG_MODE=OFF -DCMAKE_INSTALL_LIBDIR=lib
-DCMAKE_INSTALL_PREFIX=/Users/orgadish/Documents/GitHub/arrow/r/libarrow/arrow-13.0.0.9000
-DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_UNITY_BUILD=OFF
-Dxsimd_SOURCE= -Dzstd_SOURCE= -G 'Unix Makefiles'
/Users/orgadish/Documents/GitHub/arrow/cpp
-- Building using CMake version: 3.27.7
-- The C compiler identification is GNU 8.2.0
-- The CXX compiler identification is AppleClang 14.0.3.14030022
-- Checking whether C compiler has -isysroot
-- Checking whether C compiler has -isysroot - yes
-- Checking whether C compiler supports OSX deployment target flag
-- Checking whether C compiler supports OSX deployment target flag - yes
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/local/gfortran/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler:
/Library/Developer/CommandLineTools/usr/bin/clang++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Arrow version: 14.0.0 (full: '14.0.0-SNAPSHOT')
-- Arrow SO version: 1400 (full: 1400.0.0)
-- clang-tidy 14 not found
-- clang-format found, but version did not match "clang-format version 14"
-- clang-format 14 not found
-- Could NOT find ClangTools (missing: CLANG_FORMAT_BIN CLANG_TIDY_BIN)
-- infer not found
-- Found Python3:
/Library/Frameworks/Python.framework/Versions/3.11/bin/python3.11 (found
version "3.11.1") found components: Interpreter
-- Found cpplint executable at
/Users/orgadish/Documents/GitHub/arrow/cpp/build-support/cpplint.py
-- System processor: x86_64
-- Performing Test CXX_SUPPORTS_SSE4_2
-- Performing Test CXX_SUPPORTS_SSE4_2 - Success
-- Performing Test CXX_SUPPORTS_AVX2
-- Performing Test CXX_SUPPORTS_AVX2 - Success
-- Performing Test CXX_SUPPORTS_AVX512
-- Performing Test CXX_SUPPORTS_AVX512 - Success
-- Arrow build warning level: PRODUCTION
-- Build Type: RELEASE
-- Performing Test CXX_LINKER_SUPPORTS_VERSION_SCRIPT
-- Performing Test CXX_LINKER_SUPPORTS_VERSION_SCRIPT - Failed
-- Using BUNDLED approach to find dependencies
-- ARROW_ABSL_BUILD_VERSION: 20211102.0
-- ARROW_ABSL_BUILD_SHA256_CHECKSUM:
dcf71b9cba8dc0ca9940c4b316a0c796be8fab42b070bb6b7cab62b48f0e66c4
-- ARROW_AWS_C_AUTH_BUILD_VERSION: v0.6.22
-- ARROW_AWS_C_AUTH_BUILD_SHA256_CHECKSUM:
691a6b4418afcd3dc141351b6ad33fccd8e3ff84df0e9e045b42295d284ee14c
-- ARROW_AWS_C_CAL_BUILD_VERSION: v0.5.20
-- ARROW_AWS_C_CAL_BUILD_SHA256_CHECKSUM:
acc352359bd06f8597415c366cf4ec4f00d0b0da92d637039a73323dd55b6cd0
-- ARROW_AWS_C_COMMON_BUILD_VERSION: v0.8.9
-- ARROW_AWS_C_COMMON_BUILD_SHA256_CHECKSUM:
2f3fbaf7c38eae5a00e2a816d09b81177f93529ae8ba1b82dc8f31407565327a
-- ARROW_AWS_C_COMPRESSION_BUILD_VERSION: v0.2.16
-- ARROW_AWS_C_COMPRESSION_BUILD_SHA256_CHECKSUM:
044b1dbbca431a07bde8255ef9ec443c300fc60d4c9408d4b862f65e496687f4
-- ARROW_AWS_C_EVENT_STREAM_BUILD_VERSION: v0.2.18
-- ARROW_AWS_C_EVENT_STREAM_BUILD_SHA256_CHECKSUM:
310ca617f713bf664e4c7485a3d42c1fb57813abd0107e49790d107def7cde4f
-- ARROW_AWS_C_HTTP_BUILD_VERSION: v0.7.3
-- ARROW_AWS_C_HTTP_BUILD_SHA256_CHECKSUM:
07e16c6bf5eba6f0dea96b6f55eae312a7c95b736f4d2e4a210000f45d8265ae
-- ARROW_AWS_C_IO_BUILD_VERSION: v0.13.14
-- ARROW_AWS_C_IO_BUILD_SHA256_CHECKSUM:
12b66510c3d9a4f7e9b714e9cfab2a5bf835f8b9ce2f909d20ae2a2128608c71
-- ARROW_AWS_C_MQTT_BUILD_VERSION: v0.8.4
-- ARROW_AWS_C_MQTT_BUILD_SHA256_CHECKSUM:
232eeac63e72883d460c686a09b98cdd811d24579affac47c5c3f696f956773f
-- ARROW_AWS_C_S3_BUILD_VERSION: v0.2.3
-- ARROW_AWS_C_S3_BUILD_SHA256_CHECKSUM:
a00b3c9f319cd1c9aa2c3fa15098864df94b066dcba0deaccbb3caa952d902fe
-- ARROW_AWS_C_SDKUTILS_BUILD_VERSION: v0.1.6
-- ARROW_AWS_C_SDKUTILS_BUILD_SHA256_CHECKSUM:
8a2951344b2fb541eab1e9ca17c18a7fcbfd2aaff4cdd31d362d1fad96111b91
-- ARROW_AWS_CHECKSUMS_BUILD_VERSION: v0.1.13
-- ARROW_AWS_CHECKSUMS_BUILD_SHA256_CHECKSUM:
0f897686f1963253c5069a0e495b85c31635ba146cd3ac38cc2ea31eaf54694d
-- ARROW_AWS_CRT_CPP_BUILD_VERSION: v0.18.16
-- ARROW_AWS_CRT_CPP_BUILD_SHA256_CHECKSUM:
9e69bc1dc4b50871d1038aa9ff6ddeb4c9b28f7d6b5e5b1b69041ccf50a13483
-- ARROW_AWS_LC_BUILD_VERSION: v1.3.0
-- ARROW_AWS_LC_BUILD_SHA256_CHECKSUM:
ae96a3567161552744fc0cae8b4d68ed88b1ec0f3d3c98700070115356da5a37
-- ARROW_AWSSDK_BUILD_VERSION: 1.10.55
-- ARROW_AWSSDK_BUILD_SHA256_CHECKSUM:
2d552fb1a84bef4a9b65e34aa7031851ed2aef5319e02cc6e4cb735c48aa30de
-- ARROW_AZURE_SDK_BUILD_VERSION: azure-core_1.10.2
-- ARROW_AZURE_SDK_BUILD_SHA256_CHECKSUM:
36557dae87de4cdd257d9b441d9a7f043290eae6666fb1065e0fa486ae3e58a0
-- ARROW_BOOST_BUILD_VERSION: 1.81.0
-- ARROW_BOOST_BUILD_SHA256_CHECKSUM:
9e0ffae35528c35f90468997bc8d99500bf179cbae355415a89a600c38e13574
-- ARROW_BROTLI_BUILD_VERSION: v1.0.9
-- ARROW_BROTLI_BUILD_SHA256_CHECKSUM:
f9e8d81d0405ba66d181529af42a3354f838c939095ff99930da6aa9cdf6fe46
-- ARROW_BZIP2_BUILD_VERSION: 1.0.8
-- ARROW_BZIP2_BUILD_SHA256_CHECKSUM:
ab5a03176ee106d3f0fa90e381da478ddae405918153cca248e682cd0c4a2269
-- ARROW_CARES_BUILD_VERSION: 1.17.2
-- ARROW_CARES_BUILD_SHA256_CHECKSUM:
4803c844ce20ce510ef0eb83f8ea41fa24ecaae9d280c468c582d2bb25b3913d
-- ARROW_CRC32C_BUILD_VERSION: 1.1.2
-- ARROW_CRC32C_BUILD_SHA256_CHECKSUM:
ac07840513072b7fcebda6e821068aa04889018f24e10e46181068fb214d7e56
-- ARROW_GBENCHMARK_BUILD_VERSION: v1.7.1
-- ARROW_GBENCHMARK_BUILD_SHA256_CHECKSUM:
6430e4092653380d9dc4ccb45a1e2dc9259d581f4866dc0759713126056bc1d7
-- ARROW_GFLAGS_BUILD_VERSION: v2.2.2
-- ARROW_GFLAGS_BUILD_SHA256_CHECKSUM:
34af2f15cf7367513b352bdcd2493ab14ce43692d2dcd9dfc499492966c64dcf
-- ARROW_GLOG_BUILD_VERSION: v0.5.0
-- ARROW_GLOG_BUILD_SHA256_CHECKSUM:
eede71f28371bf39aa69b45de23b329d37214016e2055269b3b5e7cfd40b59f5
-- ARROW_GOOGLE_CLOUD_CPP_BUILD_VERSION: v2.12.0
-- ARROW_GOOGLE_CLOUD_CPP_BUILD_SHA256_CHECKSUM:
8cda870803925c62de8716a765e03eb9d34249977e5cdb7d0d20367e997a55e2
-- ARROW_GRPC_BUILD_VERSION: v1.46.3
-- ARROW_GRPC_BUILD_SHA256_CHECKSUM:
d6cbf22cb5007af71b61c6be316a79397469c58c82a942552a62e708bce60964
-- ARROW_GTEST_BUILD_VERSION: 1.11.0
-- ARROW_GTEST_BUILD_SHA256_CHECKSUM:
b4870bf121ff7795ba20d20bcdd8627b8e088f2d1dab299a031c1034eddc93d5
-- ARROW_JEMALLOC_BUILD_VERSION: 5.3.0
-- ARROW_JEMALLOC_BUILD_SHA256_CHECKSUM:
2db82d1e7119df3e71b7640219b6dfe84789bc0537983c3b7ac4f7189aecfeaa
-- ARROW_LZ4_BUILD_VERSION: v1.9.4
-- ARROW_LZ4_BUILD_SHA256_CHECKSUM:
0b0e3aa07c8c063ddf40b082bdf7e37a1562bda40a0ff5272957f3e987e0e54b
-- ARROW_MIMALLOC_BUILD_VERSION: v2.0.6
-- ARROW_MIMALLOC_BUILD_SHA256_CHECKSUM:
9f05c94cc2b017ed13698834ac2a3567b6339a8bde27640df5a1581d49d05ce5
-- ARROW_NLOHMANN_JSON_BUILD_VERSION: v3.10.5
-- ARROW_NLOHMANN_JSON_BUILD_SHA256_CHECKSUM:
5daca6ca216495edf89d167f808d1d03c4a4d929cef7da5e10f135ae1540c7e4
-- ARROW_OPENTELEMETRY_BUILD_VERSION: v1.8.1
-- ARROW_OPENTELEMETRY_BUILD_SHA256_CHECKSUM:
3d640201594b07f08dade9cd1017bd0b59674daca26223b560b9bb6bf56264c2
-- ARROW_OPENTELEMETRY_PROTO_BUILD_VERSION: v0.17.0
-- ARROW_OPENTELEMETRY_PROTO_BUILD_SHA256_CHECKSUM:
f269fbcb30e17b03caa1decd231ce826e59d7651c0f71c3b28eb5140b4bb5412
-- ARROW_ORC_BUILD_VERSION: 1.9.0
-- ARROW_ORC_BUILD_SHA256_CHECKSUM:
0dca8bbccdb2ee87e59ba964933436beebd02ea78c4134424828a8127fbc4faa
-- ARROW_PROTOBUF_BUILD_VERSION: v21.3
-- ARROW_PROTOBUF_BUILD_SHA256_CHECKSUM:
2f723218f6cb709ae4cdc4fb5ed56a5951fc5d466f0128ce4c946b8c78c8c49f
-- ARROW_RAPIDJSON_BUILD_VERSION: 232389d4f1012dddec4ef84861face2d2ba85709
-- ARROW_RAPIDJSON_BUILD_SHA256_CHECKSUM:
b9290a9a6d444c8e049bd589ab804e0ccf2b05dc5984a19ed5ae75d090064806
-- ARROW_RE2_BUILD_VERSION: 2022-06-01
-- ARROW_RE2_BUILD_SHA256_CHECKSUM:
f89c61410a072e5cbcf8c27e3a778da7d6fd2f2b5b1445cd4f4508bee946ab0f
-- ARROW_SNAPPY_BUILD_VERSION: 1.1.10
-- ARROW_SNAPPY_BUILD_SHA256_CHECKSUM:
49d831bffcc5f3d01482340fe5af59852ca2fe76c3e05df0e67203ebbe0f1d90
-- ARROW_SUBSTRAIT_BUILD_VERSION: v0.27.0
-- ARROW_SUBSTRAIT_BUILD_SHA256_CHECKSUM:
4ed375f69d972a57fdc5ec406c17003a111831d8640d3f1733eccd4b3ff45628
-- ARROW_S2N_TLS_BUILD_VERSION: v1.3.35
-- ARROW_S2N_TLS_BUILD_SHA256_CHECKSUM:
9d32b26e6bfcc058d98248bf8fc231537e347395dd89cf62bb432b55c5da990d
-- ARROW_THRIFT_BUILD_VERSION: 0.16.0
-- ARROW_THRIFT_BUILD_SHA256_CHECKSUM:
f460b5c1ca30d8918ff95ea3eb6291b3951cf518553566088f3f2be8981f6209
-- ARROW_UCX_BUILD_VERSION: 1.12.1
-- ARROW_UCX_BUILD_SHA256_CHECKSUM:
9bef31aed0e28bf1973d28d74d9ac4f8926c43ca3b7010bd22a084e164e31b71
-- ARROW_UTF8PROC_BUILD_VERSION: v2.7.0
-- ARROW_UTF8PROC_BUILD_SHA256_CHECKSUM:
4bb121e297293c0fd55f08f83afab6d35d48f0af4ecc07523ad8ec99aa2b12a1
-- ARROW_XSIMD_BUILD_VERSION: 9.0.1
-- ARROW_XSIMD_BUILD_SHA256_CHECKSUM:
b1bb5f92167fd3a4f25749db0be7e61ed37e0a5d943490f3accdcd2cd2918cc0
-- ARROW_ZLIB_BUILD_VERSION: 1.2.13
-- ARROW_ZLIB_BUILD_SHA256_CHECKSUM:
b3a24de97a8fdbc835b9833169501030b8977031bcb54b3b3ac13740f846ab30
-- ARROW_ZSTD_BUILD_VERSION: 1.5.5
-- ARROW_ZSTD_BUILD_SHA256_CHECKSUM:
9c4396cc829cfae319a6e2615202e82aad41372073482fce286fac78646d3ee4
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - no
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - not found
CMake Error at
/usr/local/Cellar/cmake/3.27.7/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:230
(message):
Could NOT find Threads (missing: Threads_FOUND)
Call Stack (most recent call first):
/usr/local/Cellar/cmake/3.27.7/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:600
(_FPHSA_FAILURE_MESSAGE)
/usr/local/Cellar/cmake/3.27.7/share/cmake/Modules/FindThreads.cmake:226
(FIND_PACKAGE_HANDLE_STANDARD_ARGS)
cmake_modules/ThirdpartyToolchain.cmake:1020 (find_package)
CMakeLists.txt:542 (include)
-- Configuring incomplete, errors occurred!
**** Error building Arrow C++.
PKG_CFLAGS=
PKG_LIBS=
** libs
using C++ compiler: ‘g++ (GCC) 8.2.0’
using C++17
using SDK: ‘MacOSX13.3.sdk’
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c RTasks.cpp -o RTasks.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c altrep.cpp -o altrep.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c array.cpp -o array.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c array_to_vector.cpp -o array_to_vector.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c arraydata.cpp -o arraydata.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c arrowExports.cpp -o arrowExports.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c bridge.cpp -o bridge.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c buffer.cpp -o buffer.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c chunkedarray.cpp -o chunkedarray.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c compression.cpp -o compression.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c compute-exec.cpp -o compute-exec.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c compute.cpp -o compute.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c config.cpp -o config.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c csv.cpp -o csv.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c dataset.cpp -o dataset.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c datatype.cpp -o datatype.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c expression.cpp -o expression.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c extension-impl.cpp -o extension-impl.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c feather.cpp -o feather.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c field.cpp -o field.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c filesystem.cpp -o filesystem.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c io.cpp -o io.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c json.cpp -o json.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c memorypool.cpp -o memorypool.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c message.cpp -o message.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c parquet.cpp -o parquet.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c r_to_arrow.cpp -o r_to_arrow.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c recordbatch.cpp -o recordbatch.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c recordbatchreader.cpp -o recordbatchreader.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c recordbatchwriter.cpp -o recordbatchwriter.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c safe-call-into-r-impl.cpp -o
safe-call-into-r-impl.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c scalar.cpp -o scalar.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c schema.cpp -o schema.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c symbols.cpp -o symbols.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c table.cpp -o table.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c threadpool.cpp -o threadpool.o
clang++ -arch x86_64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/cpp11/include'
-I/usr/local/gfortran/include
-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC
-falign-functions=64 -Wall -g -O2 -UNDEBUG -Wall -pedantic -g -O0
-fdiagnostics-color=always -c type_infer.cpp -o type_infer.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib
-Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module
-multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib
-L/usr/local/gfortran/lib -Wl,-rpath,/usr/local/gfortran/lib -o arrow.so
RTasks.o altrep.o array.o array_to_vector.o arraydata.o arrowExports.o bridge.o
buffer.o chunkedarray.o compression.o compute-exec.o compute.o config.o csv.o
dataset.o datatype.o expression.o extension-impl.o feather.o field.o
filesystem.o io.o json.o memorypool.o message.o parquet.o r_to_arrow.o
recordbatch.o recordbatchreader.o recordbatchwriter.o safe-call-into-r-impl.o
scalar.o schema.o symbols.o table.o threadpool.o type_infer.o
-F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
-Wl,CoreFoundation
installing to
/private/var/folders/gh/kkjkl7md3ml943xf33hqg6540000gp/T/RtmpoOY8O8/devtools_install_4611604d3163/00LOCK-r/00new/arrow/libs
** checking absolute paths in shared objects and dynamic libraries
─ DONE (arrow)
Error in dyn.load(dll_copy_file) :
unable to load shared object
'/var/folders/gh/kkjkl7md3ml943xf33hqg6540000gp/T//RtmpoOY8O8/pkgload461156aceb14/arrow.so':
dlopen(/var/folders/gh/kkjkl7md3ml943xf33hqg6540000gp/T//RtmpoOY8O8/pkgload461156aceb14/arrow.so,
0x0006): symbol not found in flat namespace
'__ZN5arrow12ArrayBuilder12AppendScalarERKNS_6ScalarEx'
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