paleolimbot commented on PR #40414:
URL: https://github.com/apache/arrow/pull/40414#issuecomment-1987046256
The revdep output below!
The main difference (in dataverifyr) was because I had the local version
built with extra error context. The bigquerystorage install failure has
something to do with grpc (maybe bundled vs. homebrew source). The version of
Arrow I'm using for 15.0.0 is the Python CMake preset so it has grpc built in.
The adbi failure is because I was refactoring nanoarrow while building the
checks. I can check that again but wanted to post these as soon as I had them.
<details>
# Changes
## adbi
### With CRAN arrow
```
-- R CMD check results ----------------------------------------- adbi 0.1.1
----
Duration: 32.7s
0 errors v | 0 warnings v | 0 notes v
```
### With local arrow
```
-- R CMD check results ----------------------------------------- adbi 0.1.1
----
Duration: 19.7s
> checking tests ...
See below...
-- Test failures ------------------------------------------------- testthat
----
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(adbi)
Registered S3 methods overwritten by 'adbi':
method from
infer_nanoarrow_schema.AsIs nanoarrow
infer_nanoarrow_schema.list nanoarrow
>
> test_check("adbi")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
══ Failed tests
════════════════════════════════════════════════════════════════
── Error ('test-fetch.R:14:5'): fetch result with arbitrary chunk size
─────────
Error in `convert_array.default(x, to)`: builder->PushNext() failed:
Expected array with 0 buffer(s) but found 1 buffer(s)
Backtrace:
▆
1. ├─DBI::dbFetch(res, n_seq[i]) at test-fetch.R:14:5
2. └─adbi::dbFetch(res, n_seq[i])
3. └─adbi:::as_data_frame(meta(res, "ptyp"), res@bigint)
4. ├─adbi (local) warn(nanoarrow::convert_array(x, to))
5. │ └─base::withCallingHandlers(expr, warning =
handler("nanoarrow_warning_lossy_conversion"))
6. ├─nanoarrow::convert_array(x, to)
7. └─nanoarrow:::convert_array.default(x, to) at
r/R/convert-array.R:82:3
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
Error: Test failures
Execution halted
1 error x | 0 warnings v | 0 notes v
```
## bigrquerystorage
### With CRAN arrow
```
-- R CMD check results ----------------------------- bigrquerystorage 1.0.0
----
Duration: 19.5s
> checking whether package ‘bigrquerystorage’ can be installed ... ERROR
See below...
-- Install failure
-------------------------------------------------------------
* installing *source* package ‘bigrquerystorage’ ...
** using staged installation
Package grpc++ was not found in the pkg-config search path.
Perhaps you should add the directory containing `grpc++.pc'
to the PKG_CONFIG_PATH environment variable
No package 'grpc++' found
Homebrew 4.2.11
Using PKG_CFLAGS=-I/opt/homebrew/include
Using PKG_LIBS=-L/opt/homebrew/lib -lgrpc++ -lgrpc -lprotobuf
Found C++17 compiler: clang++ -arch arm64 -std=gnu++17 -falign-functions=64
-Wall -g -O2
Using libprotoc 25.2 from /opt/homebrew/bin/protoc
Using /opt/homebrew/bin/grpc_cpp_plugin
Heads up: protoc version libprotoc 25.2 might not match libproto version
3.20.2.
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.3.9.4)’
using SDK: ‘MacOSX14.4.sdk’
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/api/field_behavior.pb.cc -o google/api/field_behavior.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/api/http.pb.cc -o google/api/http.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/api/launch_stage.pb.cc -o google/api/launch_stage.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/api/resource.pb.cc -o google/api/resource.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/arrow.pb.cc -o
google/cloud/bigquery/storage/v1/arrow.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/avro.pb.cc -o
google/cloud/bigquery/storage/v1/avro.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/table.pb.cc -o
google/cloud/bigquery/storage/v1/table.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/api/annotations.pb.cc -o google/api/annotations.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/api/client.pb.cc -o google/api/client.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/protobuf.pb.cc -o
google/cloud/bigquery/storage/v1/protobuf.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/stream.pb.cc -o
google/cloud/bigquery/storage/v1/stream.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/rpc/status.pb.cc -o google/rpc/status.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/storage.pb.cc -o
google/cloud/bigquery/storage/v1/storage.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/storage.grpc.pb.cc -o
google/cloud/bigquery/storage/v1/storage.grpc.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bqs.cpp
-o bqs.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib
-Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module
-multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib
-L/opt/R/arm64/lib -o bigrquerystorage.so google/api/field_behavior.pb.o
google/api/http.pb.o google/api/launch_stage.pb.o google/api/resource.pb.o
google/cloud/bigquery/storage/v1/arrow.pb.o
google/cloud/bigquery/storage/v1/avro.pb.o
google/cloud/bigquery/storage/v1/table.pb.o google/api/annotations.pb.o
google/api/client.pb.o google/cloud/bigquery/storage/v1/protobuf.pb.o
google/cloud/bigquery/storage/v1/stream.pb.o google/rpc/status.pb.o
google/cloud/bigquery/storage/v1/storage.pb.o
google/cloud/bigquery/storage/v1/storage.grpc.pb.o bqs.o RcppExports.o
-L/opt/homebrew/lib -lgrpc++ -lgrpc -lprotobuf
-F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
-Wl,CoreFoundation
ld: warning: -single_module is obsolete
ld: warning: -multiply_defined is obsolete
installing to
/Users/deweydunnington/Desktop/rscratch/arrow-revdeps/check_with_cran/bigrquerystorage/bigrquerystorage.Rcheck/00LOCK-bigrquerystorage/00new/bigrquerystorage/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
sh: line 1: 95286 Abort trap: 6 R_TESTS=
'/Library/Frameworks/R.framework/Resources/bin/R' --no-save --no-restore
--no-echo 2>&1 <
'/var/folders/gt/l87wjg8s7312zs9s7c1fgs900000gn/T//RtmpXHcDBW/file16d112fad4ba9'
[libprotobuf ERROR
../../src/protobuf-3.20.2/src/google/protobuf/descriptor_database.cc:560]
Invalid file descriptor data passed to EncodedDescriptorDatabase::Add().
[libprotobuf FATAL
../../src/protobuf-3.20.2/src/google/protobuf/descriptor.cc:1984] CHECK failed:
GeneratedDatabase()->Add(encoded_file_descriptor, size):
libc++abi: terminating due to uncaught exception of type
google::protobuf::FatalException: CHECK failed:
GeneratedDatabase()->Add(encoded_file_descriptor, size):
ERROR: loading failed
* removing
‘/Users/deweydunnington/Desktop/rscratch/arrow-revdeps/check_with_cran/bigrquerystorage/bigrquerystorage.Rcheck/bigrquerystorage’
1 error x | 0 warnings v | 0 notes v
```
### With local arrow
```
-- R CMD check results ----------------------------- bigrquerystorage 1.0.0
----
Duration: 26s
> checking whether package ‘bigrquerystorage’ can be installed ... ERROR
See below...
-- Install failure
-------------------------------------------------------------
* installing *source* package ‘bigrquerystorage’ ...
** using staged installation
Package grpc++ was not found in the pkg-config search path.
Perhaps you should add the directory containing `grpc++.pc'
to the PKG_CONFIG_PATH environment variable
No package 'grpc++' found
Homebrew 4.2.11
Using PKG_CFLAGS=-I/opt/homebrew/include
Using PKG_LIBS=-L/opt/homebrew/lib -lgrpc++ -lgrpc -lprotobuf
Found C++17 compiler: clang++ -arch arm64 -std=gnu++17 -falign-functions=64
-Wall -g -O2
Using libprotoc 25.2 from /opt/homebrew/bin/protoc
Using /opt/homebrew/bin/grpc_cpp_plugin
Heads up: protoc version libprotoc 25.2 might not match libproto version
3.20.2.
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.3.9.4)’
using SDK: ‘MacOSX14.4.sdk’
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/api/field_behavior.pb.cc -o google/api/field_behavior.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/api/http.pb.cc -o google/api/http.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/api/launch_stage.pb.cc -o google/api/launch_stage.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/api/resource.pb.cc -o google/api/resource.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/arrow.pb.cc -o
google/cloud/bigquery/storage/v1/arrow.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/avro.pb.cc -o
google/cloud/bigquery/storage/v1/avro.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/table.pb.cc -o
google/cloud/bigquery/storage/v1/table.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/api/annotations.pb.cc -o google/api/annotations.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/api/client.pb.cc -o google/api/client.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/protobuf.pb.cc -o
google/cloud/bigquery/storage/v1/protobuf.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/stream.pb.cc -o
google/cloud/bigquery/storage/v1/stream.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/rpc/status.pb.cc -o google/rpc/status.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/storage.pb.cc -o
google/cloud/bigquery/storage/v1/storage.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/storage.grpc.pb.cc -o
google/cloud/bigquery/storage/v1/storage.grpc.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bqs.cpp
-o bqs.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib
-Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module
-multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib
-L/opt/R/arm64/lib -o bigrquerystorage.so google/api/field_behavior.pb.o
google/api/http.pb.o google/api/launch_stage.pb.o google/api/resource.pb.o
google/cloud/bigquery/storage/v1/arrow.pb.o
google/cloud/bigquery/storage/v1/avro.pb.o
google/cloud/bigquery/storage/v1/table.pb.o google/api/annotations.pb.o
google/api/client.pb.o google/cloud/bigquery/storage/v1/protobuf.pb.o
google/cloud/bigquery/storage/v1/stream.pb.o google/rpc/status.pb.o
google/cloud/bigquery/storage/v1/storage.pb.o
google/cloud/bigquery/storage/v1/storage.grpc.pb.o bqs.o RcppExports.o
-L/opt/homebrew/lib -lgrpc++ -lgrpc -lprotobuf
-F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
-Wl,CoreFoundation
ld: warning: -single_module is obsolete
ld: warning: -multiply_defined is obsolete
installing to
/Users/deweydunnington/Desktop/rscratch/arrow-revdeps/check_with_local/bigrquerystorage/bigrquerystorage.Rcheck/00LOCK-bigrquerystorage/00new/bigrquerystorage/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
sh: line 1: 63804 Abort trap: 6 R_TESTS=
'/Library/Frameworks/R.framework/Resources/bin/R' --no-save --no-restore
--no-echo 2>&1 <
'/var/folders/gt/l87wjg8s7312zs9s7c1fgs900000gn/T//RtmpzTuOwh/filee43982618db'
[libprotobuf ERROR
../../src/protobuf-3.20.2/src/google/protobuf/descriptor_database.cc:560]
Invalid file descriptor data passed to EncodedDescriptorDatabase::Add().
[libprotobuf FATAL
../../src/protobuf-3.20.2/src/google/protobuf/descriptor.cc:1984] CHECK failed:
GeneratedDatabase()->Add(encoded_file_descriptor, size):
libc++abi: terminating due to uncaught exception of type
google::protobuf::FatalException: CHECK failed:
GeneratedDatabase()->Add(encoded_file_descriptor, size):
ERROR: loading failed
* removing
‘/Users/deweydunnington/Desktop/rscratch/arrow-revdeps/check_with_local/bigrquerystorage/bigrquerystorage.Rcheck/bigrquerystorage’
1 error x | 0 warnings v | 0 notes v
```
## dataverifyr
### With CRAN arrow
```
-- R CMD check results ---------------------------------- dataverifyr 0.1.8
----
Duration: 32.2s
0 errors v | 0 warnings v | 0 notes v
```
### With local arrow
```
-- R CMD check results ---------------------------------- dataverifyr 0.1.8
----
Duration: 17s
> checking tests ...
See below...
-- Test failures ------------------------------------------------- testthat
----
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(dataverifyr)
>
> test_check("dataverifyr")
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 68 ]
══ Failed tests
════════════════════════════════════════════════════════════════
── Failure ('test-check_data.R:102:3'): arrow::arrow_table check_ works
────────
dplyr::select(res, -time) (`actual`) not equal to `exp` (`expected`).
actual vs expected
error
actual[1, ]
actual[2, ]
actual[3, ]
- actual[4, ] Invalid: Failed to parse string: 'asd' as a scalar of type
double
/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/exec.cc:891
kernel_->exec(kernel_ctx_, input, out)
/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/exec.cc:859
ExecuteSingleSpan(input, &output)
/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/expression.cc:785
executor->Execute(ExecBatch(std::move(arguments), input_length), &listener)
/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/expression.cc:758
ExecuteScalarExpression(call->arguments[i], input, exec_context)
/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/expression.cc:758
ExecuteScalarExpression(call->arguments[i], input, exec_context)
/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/acero/filter_node.cc:85
ExecuteScalarExpression(simplified_filter, batch,
plan()->query_context()->exec_context())
/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/acero/map_node.cc:76
ProcessBatch(std::move(batch))
/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/acero/source_node.cc:157
output_->InputReceived(this, std::move(batch))
/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/record_batch.cc:375
ReadNext(&batch)
/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/record_batch.cc:385
ToRecordBatches()
+ expected[4, ] Invalid: Failed to parse string: 'asd' as a scalar of type
double
actual[5, ] object 'does_not_exist' not found
lines(actual$error[[4]]) vs lines(expected$error[[4]])
"Invalid: Failed to parse string: 'asd' as a scalar of type double"
-
"/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/exec.cc:891
kernel_->exec(kernel_ctx_, input, out)"
-
"/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/exec.cc:859
ExecuteSingleSpan(input, &output)"
-
"/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/expression.cc:785
executor->Execute(ExecBatch(std::move(arguments), input_length), &listener)"
-
"/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/expression.cc:758
ExecuteScalarExpression(call->arguments[i], input, exec_context)"
-
"/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/expression.cc:758
ExecuteScalarExpression(call->arguments[i], input, exec_context)"
-
"/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/acero/filter_node.cc:85
ExecuteScalarExpression(simplified_filter, batch,
plan()->query_context()->exec_context())"
-
"/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/acero/map_node.cc:76
ProcessBatch(std::move(batch))"
-
"/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/acero/source_node.cc:157
output_->InputReceived(this, std::move(batch))"
-
"/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/record_batch.cc:375
ReadNext(&batch)"
and 1 more ...
── Failure ('test-check_data.R:128:3'): arrow::open_dataset check_ works
───────
dplyr::select(res, -time) (`actual`) not equal to `exp` (`expected`).
actual vs expected
error
actual[1, ]
actual[2, ]
actual[3, ]
- actual[4, ] Invalid: Failed to parse string: 'asd' as a scalar of type
double
/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/exec.cc:891
kernel_->exec(kernel_ctx_, input, out)
/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/exec.cc:859
ExecuteSingleSpan(input, &output)
/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/expression.cc:785
executor->Execute(ExecBatch(std::move(arguments), input_length), &listener)
/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/expression.cc:758
ExecuteScalarExpression(call->arguments[i], input, exec_context)
/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/expression.cc:758
ExecuteScalarExpression(call->arguments[i], input, exec_context)
/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/acero/filter_node.cc:85
ExecuteScalarExpression(simplified_filter, batch,
plan()->query_context()->exec_context())
/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/acero/map_node.cc:76
ProcessBatch(std::move(batch))
/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/acero/source_node.cc:157
output_->InputReceived(this, std::move(batch))
/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/record_batch.cc:375
ReadNext(&batch)
/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/record_batch.cc:385
ToRecordBatches()
+ expected[4, ] Invalid: Failed to parse string: 'asd' as a scalar of type
double
actual[5, ] object 'does_not_exist' not found
lines(actual$error[[4]]) vs lines(expected$error[[4]])
"Invalid: Failed to parse string: 'asd' as a scalar of type double"
-
"/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/exec.cc:891
kernel_->exec(kernel_ctx_, input, out)"
-
"/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/exec.cc:859
ExecuteSingleSpan(input, &output)"
-
"/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/expression.cc:785
executor->Execute(ExecBatch(std::move(arguments), input_length), &listener)"
-
"/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/expression.cc:758
ExecuteScalarExpression(call->arguments[i], input, exec_context)"
-
"/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/expression.cc:758
ExecuteScalarExpression(call->arguments[i], input, exec_context)"
-
"/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/acero/filter_node.cc:85
ExecuteScalarExpression(simplified_filter, batch,
plan()->query_context()->exec_context())"
-
"/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/acero/map_node.cc:76
ProcessBatch(std::move(batch))"
-
"/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/acero/source_node.cc:157
output_->InputReceived(this, std::move(batch))"
-
"/Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/record_batch.cc:375
ReadNext(&batch)"
and 1 more ...
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 68 ]
Error: Test failures
Execution halted
1 error x | 0 warnings v | 0 notes v
```
## duckdb
### With CRAN arrow
```
-- R CMD check results ------------------------------------- duckdb 0.9.2-1
----
Duration: 9m 5.2s
> checking installed package size ... NOTE
installed size is 31.6Mb
sub-directories of 1Mb or more:
libs 30.9Mb
0 errors v | 0 warnings v | 1 note x
```
### With local arrow
```
-- R CMD check results ------------------------------------- duckdb 0.9.2-1
----
Duration: 5m 57.7s
> checking installed package size ... NOTE
installed size is 31.5Mb
sub-directories of 1Mb or more:
libs 30.9Mb
0 errors v | 0 warnings v | 1 note x
```
## sparklyr
### With CRAN arrow
```
-- R CMD check results ------------------------------------- sparklyr 1.8.4
----
Duration: 3m 1.4s
> checking installed package size ... NOTE
installed size is 7.2Mb
sub-directories of 1Mb or more:
R 2.0Mb
java 3.8Mb
0 errors v | 0 warnings v | 1 note x
```
### With local arrow
```
-- R CMD check results ------------------------------------- sparklyr 1.8.4
----
Duration: 2m 11.3s
> checking installed package size ... NOTE
installed size is 7.2Mb
sub-directories of 1Mb or more:
R 2.1Mb
java 3.8Mb
0 errors v | 0 warnings v | 1 note x
```
# Check Summary
## CRAN
```
# A tibble: 53 x 5
label pkg notes warnings errors
<chr> <chr> <list> <list> <list>
1 CRAN adbi <chr [0]> <chr [0]> <chr [0]>
2 CRAN analogsea <chr [0]> <chr [0]> <chr [0]>
3 CRAN Andromeda <chr [1]> <chr [0]> <chr [0]>
4 CRAN APCalign <chr [1]> <chr [0]> <chr [0]>
5 CRAN arkdb <chr [0]> <chr [0]> <chr [0]>
6 CRAN bigrquerystorage <chr [0]> <chr [0]> <chr [1]>
7 CRAN brclimr <chr [0]> <chr [0]> <chr [0]>
8 CRAN censobr <chr [0]> <chr [0]> <chr [0]>
9 CRAN ClickHouseHTTP <chr [0]> <chr [0]> <chr [0]>
10 CRAN dataverifyr <chr [0]> <chr [0]> <chr [0]>
11 CRAN DBI <NULL> <NULL> <NULL>
12 CRAN diffdfs <chr [0]> <chr [0]> <chr [0]>
13 CRAN disk.frame <chr [0]> <chr [0]> <chr [0]>
14 CRAN DominoDataR <chr [0]> <chr [0]> <chr [0]>
15 CRAN duckdb <chr [1]> <chr [0]> <chr [0]>
16 CRAN duckplyr <chr [0]> <chr [0]> <chr [0]>
17 CRAN ebirdst <chr [0]> <chr [0]> <chr [0]>
18 CRAN epiCleanr <chr [1]> <chr [0]> <chr [0]>
19 CRAN FaaSr <chr [0]> <chr [0]> <chr [0]>
20 CRAN filecacher <chr [0]> <chr [0]> <chr [0]>
21 CRAN finnts <chr [0]> <chr [0]> <chr [0]>
22 CRAN foundry <chr [0]> <chr [0]> <chr [0]>
23 CRAN gbifdb <chr [0]> <chr [0]> <chr [0]>
24 CRAN IGoRRR <chr [0]> <chr [0]> <chr [0]>
25 CRAN MolgenisArmadillo <chr [0]> <chr [0]> <chr [0]>
26 CRAN mrgsim.parallel <chr [0]> <chr [0]> <chr [0]>
27 CRAN nanoarrow <chr [0]> <chr [0]> <chr [0]>
28 CRAN nc <chr [0]> <chr [0]> <chr [0]>
29 CRAN neonstore <chr [0]> <chr [0]> <chr [0]>
30 CRAN nflreadr <chr [0]> <chr [0]> <chr [0]>
31 CRAN nhdplusTools <chr [0]> <chr [0]> <chr [0]>
32 CRAN noctua <chr [0]> <chr [0]> <chr [0]>
33 CRAN OlinkAnalyze <chr [1]> <chr [0]> <chr [0]>
34 CRAN opencpu <NULL> <NULL> <NULL>
35 CRAN parqr <chr [0]> <chr [0]> <chr [0]>
36 CRAN parquetize <chr [0]> <chr [0]> <chr [0]>
37 CRAN pins <chr [0]> <chr [0]> <chr [0]>
38 CRAN plumber <chr [0]> <chr [0]> <chr [0]>
39 CRAN pointblank <chr [1]> <chr [0]> <chr [0]>
40 CRAN r4ds.tutorials <chr [0]> <chr [0]> <chr [0]>
41 CRAN radiant.data <chr [0]> <chr [0]> <chr [0]>
42 CRAN RaMS <chr [1]> <chr [0]> <chr [0]>
43 CRAN RAthena <chr [0]> <chr [0]> <chr [0]>
44 CRAN receptiviti <chr [0]> <chr [0]> <chr [1]>
45 CRAN rio <chr [0]> <chr [0]> <chr [0]>
46 CRAN sfarrow <chr [0]> <chr [0]> <chr [0]>
47 CRAN sparklyr <chr [1]> <chr [0]> <chr [0]>
48 CRAN SQL <chr [0]> <chr [0]> <chr [0]>
49 CRAN starvz <chr [0]> <chr [0]> <chr [0]>
50 CRAN strand <chr [1]> <chr [0]> <chr [0]>
51 CRAN tidyquery <chr [0]> <chr [0]> <chr [0]>
52 CRAN tiledb <chr [1]> <chr [0]> <chr [0]>
53 CRAN vetiver <chr [0]> <chr [0]> <chr [0]>
```
## Local
```
# A tibble: 53 x 5
label pkg notes warnings errors
<chr> <chr> <list> <list> <list>
1 local adbi <chr [0]> <chr [0]> <chr [1]>
2 local analogsea <chr [0]> <chr [0]> <chr [0]>
3 local Andromeda <chr [1]> <chr [0]> <chr [0]>
4 local APCalign <chr [1]> <chr [0]> <chr [0]>
5 local arkdb <chr [0]> <chr [0]> <chr [0]>
6 local bigrquerystorage <chr [0]> <chr [0]> <chr [1]>
7 local brclimr <chr [0]> <chr [0]> <chr [0]>
8 local censobr <chr [0]> <chr [0]> <chr [0]>
9 local ClickHouseHTTP <chr [0]> <chr [0]> <chr [0]>
10 local dataverifyr <chr [0]> <chr [0]> <chr [1]>
11 local DBI <NULL> <NULL> <NULL>
12 local diffdfs <chr [0]> <chr [0]> <chr [0]>
13 local disk.frame <chr [0]> <chr [0]> <chr [0]>
14 local DominoDataR <chr [0]> <chr [0]> <chr [0]>
15 local duckdb <chr [1]> <chr [0]> <chr [0]>
16 local duckplyr <chr [0]> <chr [0]> <chr [0]>
17 local ebirdst <chr [0]> <chr [0]> <chr [0]>
18 local epiCleanr <chr [1]> <chr [0]> <chr [0]>
19 local FaaSr <chr [0]> <chr [0]> <chr [0]>
20 local filecacher <chr [0]> <chr [0]> <chr [0]>
21 local finnts <chr [0]> <chr [0]> <chr [0]>
22 local foundry <chr [0]> <chr [0]> <chr [0]>
23 local gbifdb <chr [0]> <chr [0]> <chr [0]>
24 local IGoRRR <chr [0]> <chr [0]> <chr [0]>
25 local MolgenisArmadillo <chr [0]> <chr [0]> <chr [0]>
26 local mrgsim.parallel <chr [0]> <chr [0]> <chr [0]>
27 local nanoarrow <chr [0]> <chr [0]> <chr [0]>
28 local nc <chr [0]> <chr [0]> <chr [0]>
29 local neonstore <chr [0]> <chr [0]> <chr [0]>
30 local nflreadr <chr [0]> <chr [0]> <chr [0]>
31 local nhdplusTools <chr [0]> <chr [0]> <chr [0]>
32 local noctua <chr [0]> <chr [0]> <chr [0]>
33 local OlinkAnalyze <chr [1]> <chr [0]> <chr [0]>
34 local opencpu <NULL> <NULL> <NULL>
35 local parqr <chr [0]> <chr [0]> <chr [0]>
36 local parquetize <chr [0]> <chr [0]> <chr [0]>
37 local pins <chr [0]> <chr [0]> <chr [0]>
38 local plumber <chr [0]> <chr [0]> <chr [0]>
39 local pointblank <chr [1]> <chr [0]> <chr [0]>
40 local r4ds.tutorials <chr [0]> <chr [0]> <chr [0]>
41 local radiant.data <chr [0]> <chr [0]> <chr [0]>
42 local RaMS <chr [1]> <chr [0]> <chr [0]>
43 local RAthena <chr [0]> <chr [0]> <chr [0]>
44 local receptiviti <chr [0]> <chr [0]> <chr [1]>
45 local rio <chr [0]> <chr [0]> <chr [0]>
46 local sfarrow <chr [0]> <chr [0]> <chr [0]>
47 local sparklyr <chr [1]> <chr [0]> <chr [0]>
48 local SQL <chr [0]> <chr [0]> <chr [0]>
49 local starvz <chr [0]> <chr [0]> <chr [0]>
50 local strand <chr [1]> <chr [0]> <chr [0]>
51 local tidyquery <chr [0]> <chr [0]> <chr [0]>
52 local tiledb <chr [1]> <chr [0]> <chr [0]>
53 local vetiver <chr [0]> <chr [0]> <chr [0]>
```
# All notes and errors
## adbi
```
-- R CMD check results ----------------------------------------- adbi 0.1.1
----
Duration: 32.7s
0 errors v | 0 warnings v | 0 notes v
```
## bigrquerystorage
```
-- R CMD check results ----------------------------- bigrquerystorage 1.0.0
----
Duration: 19.5s
> checking whether package ‘bigrquerystorage’ can be installed ... ERROR
See below...
-- Install failure
-------------------------------------------------------------
* installing *source* package ‘bigrquerystorage’ ...
** using staged installation
Package grpc++ was not found in the pkg-config search path.
Perhaps you should add the directory containing `grpc++.pc'
to the PKG_CONFIG_PATH environment variable
No package 'grpc++' found
Homebrew 4.2.11
Using PKG_CFLAGS=-I/opt/homebrew/include
Using PKG_LIBS=-L/opt/homebrew/lib -lgrpc++ -lgrpc -lprotobuf
Found C++17 compiler: clang++ -arch arm64 -std=gnu++17 -falign-functions=64
-Wall -g -O2
Using libprotoc 25.2 from /opt/homebrew/bin/protoc
Using /opt/homebrew/bin/grpc_cpp_plugin
Heads up: protoc version libprotoc 25.2 might not match libproto version
3.20.2.
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.3.9.4)’
using SDK: ‘MacOSX14.4.sdk’
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/api/field_behavior.pb.cc -o google/api/field_behavior.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/api/http.pb.cc -o google/api/http.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/api/launch_stage.pb.cc -o google/api/launch_stage.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/api/resource.pb.cc -o google/api/resource.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/arrow.pb.cc -o
google/cloud/bigquery/storage/v1/arrow.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/avro.pb.cc -o
google/cloud/bigquery/storage/v1/avro.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/table.pb.cc -o
google/cloud/bigquery/storage/v1/table.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/api/annotations.pb.cc -o google/api/annotations.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/api/client.pb.cc -o google/api/client.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/protobuf.pb.cc -o
google/cloud/bigquery/storage/v1/protobuf.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/stream.pb.cc -o
google/cloud/bigquery/storage/v1/stream.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/rpc/status.pb.cc -o google/rpc/status.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/storage.pb.cc -o
google/cloud/bigquery/storage/v1/storage.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
google/cloud/bigquery/storage/v1/storage.grpc.pb.cc -o
google/cloud/bigquery/storage/v1/storage.grpc.pb.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bqs.cpp
-o bqs.o
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.
-I/opt/homebrew/include
-I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib
-Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module
-multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib
-L/opt/R/arm64/lib -o bigrquerystorage.so google/api/field_behavior.pb.o
google/api/http.pb.o google/api/launch_stage.pb.o google/api/resource.pb.o
google/cloud/bigquery/storage/v1/arrow.pb.o
google/cloud/bigquery/storage/v1/avro.pb.o
google/cloud/bigquery/storage/v1/table.pb.o google/api/annotations.pb.o
google/api/client.pb.o google/cloud/bigquery/storage/v1/protobuf.pb.o
google/cloud/bigquery/storage/v1/stream.pb.o google/rpc/status.pb.o
google/cloud/bigquery/storage/v1/storage.pb.o
google/cloud/bigquery/storage/v1/storage.grpc.pb.o bqs.o RcppExports.o
-L/opt/homebrew/lib -lgrpc++ -lgrpc -lprotobuf
-F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
-Wl,CoreFoundation
ld: warning: -single_module is obsolete
ld: warning: -multiply_defined is obsolete
installing to
/Users/deweydunnington/Desktop/rscratch/arrow-revdeps/check_with_cran/bigrquerystorage/bigrquerystorage.Rcheck/00LOCK-bigrquerystorage/00new/bigrquerystorage/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
sh: line 1: 95286 Abort trap: 6 R_TESTS=
'/Library/Frameworks/R.framework/Resources/bin/R' --no-save --no-restore
--no-echo 2>&1 <
'/var/folders/gt/l87wjg8s7312zs9s7c1fgs900000gn/T//RtmpXHcDBW/file16d112fad4ba9'
[libprotobuf ERROR
../../src/protobuf-3.20.2/src/google/protobuf/descriptor_database.cc:560]
Invalid file descriptor data passed to EncodedDescriptorDatabase::Add().
[libprotobuf FATAL
../../src/protobuf-3.20.2/src/google/protobuf/descriptor.cc:1984] CHECK failed:
GeneratedDatabase()->Add(encoded_file_descriptor, size):
libc++abi: terminating due to uncaught exception of type
google::protobuf::FatalException: CHECK failed:
GeneratedDatabase()->Add(encoded_file_descriptor, size):
ERROR: loading failed
* removing
‘/Users/deweydunnington/Desktop/rscratch/arrow-revdeps/check_with_cran/bigrquerystorage/bigrquerystorage.Rcheck/bigrquerystorage’
1 error x | 0 warnings v | 0 notes v
```
## dataverifyr
```
-- R CMD check results ---------------------------------- dataverifyr 0.1.8
----
Duration: 32.2s
0 errors v | 0 warnings v | 0 notes v
```
## receptiviti
```
-- R CMD check results ---------------------------------- receptiviti 0.1.7
----
Duration: 23s
> checking tests ...
See below...
-- Test failures ------------------------------------------------- testthat
----
> library(testthat)
> library(receptiviti)
>
> test_check("receptiviti")
Status: ERROR
Message: URL is unreachable
NULL
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 16 ]
══ Skipped tests (2)
═══════════════════════════════════════════════════════════
• no API key (2): 'test-receptiviti.R:31:1', 'test-receptiviti_status.R:17:1'
══ Failed tests
════════════════════════════════════════════════════════════════
── Failure ('test-receptiviti_status.R:6:3'): failures works
───────────────────
...[] (`actual`) not identical to "Message: 404" (`expected`).
`actual`: "Message: URL is unreachable"
`expected`: "Message: 404"
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 16 ]
Error: Test failures
Execution halted
1 error x | 0 warnings v | 0 notes v
```
## Andromeda
```
-- R CMD check results ------------------------------------ Andromeda 0.6.5
----
Duration: 1m 39.1s
> checking dependencies in R code ... NOTE
The operation couldn’t be completed. Unable to locate a Java Runtime.
Please visit http://www.java.com for information on installing Java.
0 errors v | 0 warnings v | 1 note x
```
## APCalign
```
-- R CMD check results ------------------------------------- APCalign 0.1.3
----
Duration: 11m 54.8s
> checking data for non-ASCII characters ... NOTE
Note: found 4 marked UTF-8 strings
0 errors v | 0 warnings v | 1 note x
```
## duckdb
```
-- R CMD check results ------------------------------------- duckdb 0.9.2-1
----
Duration: 9m 5.2s
> checking installed package size ... NOTE
installed size is 31.6Mb
sub-directories of 1Mb or more:
libs 30.9Mb
0 errors v | 0 warnings v | 1 note x
```
## epiCleanr
```
-- R CMD check results ------------------------------------ epiCleanr 0.2.0
----
Duration: 1m 2.5s
> checking installed package size ... NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
doc 2.9Mb
help 2.5Mb
0 errors v | 0 warnings v | 1 note x
```
## OlinkAnalyze
```
-- R CMD check results --------------------------------- OlinkAnalyze 3.7.0
----
Duration: 4m 55.8s
> checking package dependencies ... NOTE
Package suggested but not available for checking: ‘clusterProfiler’
0 errors v | 0 warnings v | 1 note x
```
## pointblank
```
-- R CMD check results ---------------------------------- pointblank 0.12.0
----
Duration: 3m 12.5s
> checking data for non-ASCII characters ... NOTE
Note: found 1 marked UTF-8 string
0 errors v | 0 warnings v | 1 note x
```
## RaMS
```
-- R CMD check results ----------------------------------------- RaMS 1.4.0
----
Duration: 5m 18.6s
> checking package dependencies ... NOTE
Package suggested but not available for checking: ‘Spectra’
0 errors v | 0 warnings v | 1 note x
```
## sparklyr
```
-- R CMD check results ------------------------------------- sparklyr 1.8.4
----
Duration: 3m 1.4s
> checking installed package size ... NOTE
installed size is 7.2Mb
sub-directories of 1Mb or more:
R 2.0Mb
java 3.8Mb
0 errors v | 0 warnings v | 1 note x
```
## strand
```
-- R CMD check results --------------------------------------- strand 0.2.0
----
Duration: 3m 23.1s
> checking data for non-ASCII characters ... NOTE
Note: found 1 marked UTF-8 string
0 errors v | 0 warnings v | 1 note x
```
## tiledb
```
-- R CMD check results -------------------------------------- tiledb 0.24.0
----
Duration: 2m 36.9s
> checking installed package size ... NOTE
installed size is 39.7Mb
sub-directories of 1Mb or more:
libs 1.9Mb
tiledb 35.4Mb
0 errors v | 0 warnings v | 1 note x
```
</details>
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