eddelbuettel edited a comment on issue #6435:
URL: https://github.com/apache/arrow/issues/6435#issuecomment-1065916683
On Debian testing (fully current) with release 7.0.0 I can avoid the AVX
issue on the old chipset by installing `libsnappy-dev`, and by (as before)
unsetting `ccache` -- but builds still fail at the final loading stage and I
would not know how to debug this:
```
[...lots omitted...]
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpMAMG47/R.INSTALL378f7d3f2336cf/arrow/libarrow/arrow-7.0.0/include
-DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
-DARROW_R_WITH
_S3 -DARROW_R_WITH_JSON -I'/home/dirk/tmp/lib/cpp11/include' -fpic -g
-O2 -Wall -pipe -Wno-deprecated-declarations -Wno-parentheses
-Wno-maybe-uninitialized -Wno-unused -Wno-sign-compare -Wno-ignored-attrib
utes -Wno-nonnull -c threadpool.cpp -o threadpool.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpMAMG47/R.INSTALL378f7d3f2336cf/arrow/libarrow/arrow-7.0.0/include
-DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
-DARROW_R_WITH
_S3 -DARROW_R_WITH_JSON -I'/home/dirk/tmp/lib/cpp11/include' -fpic -g
-O2 -Wall -pipe -Wno-deprecated-declarations -Wno-parentheses
-Wno-maybe-uninitialized -Wno-unused -Wno-sign-compare -Wno-ignored-attrib
utes -Wno-nonnull -c type_infer.cpp -o type_infer.o
g++ -std=gnu++11 -Wl,-S -shared -L/usr/lib/R/lib -Wl,-z,relro -o arrow.so
RTasks.o altrep.o array.o array_to_vector.o arraydata.o arrowExports.o bridge.o
buffer.o chunkedarray.o compression.o compute-exec.o comp
ute.o config.o csv.o dataset.o datatype.o expression.o feather.o field.o
filesystem.o imports.o io.o json.o memorypool.o message.o parquet.o
r_to_arrow.o recordbatch.o recordbatchreader.o recordbatchwriter.o sca
lar.o schema.o symbols.o table.o threadpool.o type_infer.o
-L/tmp/RtmpMAMG47/R.INSTALL378f7d3f2336cf/arrow/libarrow/arrow-7.0.0/lib
-larrow_dataset -lparquet -larrow -larrow /usr/lib/x86_64-linux-gnu/libbz2.so -
pthread -larrow_bundled_dependencies -lsnappy -lbrotlidec -lbrotlienc
-lbrotlicommon -lz -llz4 -lzstd -larrow -larrow_bundled_dependencies
-larrow_dataset -lparquet -lssl -lcrypto -lcurl -L/usr/lib/R/lib -lR
installing to /home/dirk/tmp/lib/00LOCK-arrow/00new/arrow/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
*** caught illegal operation ***
address 0x7fc1c4914d73, cause 'illegal operand'
Traceback:
1: dyn.load(file, DLLpath = DLLpath, ...)
2: library.dynam(lib, package, package.lib)
3: loadNamespace(package, lib.loc)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns <-
loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos, deps,
exclude, include.only)}, error = function(e) { P <- if (!is.null(cc <-
conditionCall(e))) paste(" in", deparse(cc)[1L]) else "" msg <-
gettextf("package or namespace load failed for %s%s:\n %s",
sQuote(package), P, conditionMessage(e)) if (logical.return && !quietly)
message(paste("Error:", msg), domain = NA) else stop(msg, call. = FALSE,
domain = NA)})
8: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return =
TRUE)
9: withCallingHandlers(expr, packageStartupMessage = function(c)
tryInvokeRestart("muffleMessage"))
10: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib,
character.only = TRUE, logical.return = TRUE))
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
(!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch)))
call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L)
prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <-
strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type =
"w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L +
nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if
(w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <-
"Error : " msg <- paste0(prefix, conditionMessage(e), "\n")
.Internal(seterrmessage(msg[1L])) if (!silent &&
isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile)
.Internal(printDeferredWarnings()) } invisible(structure(msg, class =
"try-error", condition = e))})
15: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib,
character.only = TRUE, logical.return = TRUE)))
16: tools:::.test_load_package("arrow",
"/home/dirk/tmp/lib/00LOCK-arrow/00new")
An irrecoverable exception occurred. R is aborting now ...
Illegal instruction
ERROR: loading failed
* removing ‘/home/dirk/tmp/lib/arrow’
The downloaded source packages are in
‘/tmp/downloaded_packages’
Warning message:
In install.packages(pkgs, ...) :
installation of package ‘arrow’ had non-zero exit status
dirk@cloud-devel:~$
```
I set `NOT_CRAN=true ARROW_R_DEV=true` and gave a target directory. Debian
testing, current -- i.e. a platform without RSPM support a fallback :-/
Any suggestions?
PS Silly me. I just realized that this _is_ the AVX issue. We're still
getting an invalid code upsetting the cpu. So no `arrow` for me on this older
Xeon 5140.
PPS Maybe it is xsimd. When I turn off everything that can be turned off
(per the vignette) it still pulls xsimd, and then fails. Call was `ARROW_S3=OFF
ARROW_JEMALLOC=OFF ARROW_MIMALLOC=OFF ARROW_PARQUET=OFF ARROW_DATASET=OFF
ARROW_JSON=OFF ARROW_WITH_RE2=OFF ARROW_WITH_UTF8PROC=OFF ARROW_WITH_BROTIL=OFF
ARROW_WITH_BZ2=OFF ARROW_WITH_LZ4=OFF ARROW_WITH_SNAPPY=OFF ARROW_WITH_ZLIB=OFF
ARROW_WITH_ZSTD=OFF NOT_CRAN=true ARROW_R_DEV=true install2.r -l tmp/lib
/tmp/arrow_7.0.0.tar.gz`
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