chamikaramj commented on a change in pull request #13283:
URL: https://github.com/apache/beam/pull/13283#discussion_r521618026



##########
File path: sdks/python/apache_beam/runners/dataflow/dataflow_runner.py
##########
@@ -542,19 +593,32 @@ def run_pipeline(self, pipeline, options):
       # TODO(chamikara): remove following pipeline and pipeline proto 
recreation
       # after portable job submission path is fully in place.
       from apache_beam import Pipeline
-      pipeline = Pipeline.from_runner_api(
+      pipeline, src_context = Pipeline.from_runner_api(
           self.proto_pipeline,
           pipeline.runner,
           options,
+          return_context=True,
           allow_proto_holders=True)
 
       # Pipelines generated from proto do not have output set to PDone set for
       # leaf elements.
       pipeline.visit(self._set_pdone_visitor(pipeline))
 
+      from apache_beam.runners import pipeline_context
+      dst_context = pipeline_context.PipelineContext(
+          component_id_map=pipeline.component_id_map,
+          default_environment=self._default_environment)
+
+      # Copy external environments to prevent dangling environment ids
+      pipeline.visit(

Review comment:
       "RunnerAPIPTransformHolder" is expected to go away soon (when we enable 
portable job submission). Do you think we can skip this test (that use Python 
external transforms in a Python pipeline) for now and try without these updates 
when we have portable job submission ?




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