(cc'ing to gbrowse list as this pertains somewhat...) Just added a bioperl bug report for this along with the png file output from perl 5.8 and perl 5.10:
http://bugzilla.open-bio.org/show_bug.cgi?id=2457 Lincoln's recent commits to Bio::Graphics::FeatureFile didn't fix the issue. However, it is now pinpointing the problem for both perl 5.8 and perl 5.10 (same warning for both, with only perl 5.10 failing): 1..35 ok 1 - use Bio::Graphics::FeatureFile; ok 2 - use Bio::Graphics::Panel; ok 3 Cosmid EST FGENESH SwissProt P-element / yk53c10.3 yk53c10.5 at Bio/ Graphics/FeatureFile.pm line 285. not ok 4 # Failed test at t/BioGraphics.t line 49. # got: '7' # expected: '5' ok 5 ok 6 ok 7 ok 8 ... chris On Feb 21, 2008, at 10:37 PM, Chris Fields wrote: > I'm getting a single failed test for Bio::Graphics in bioperl-live > which appears to be perl 5.10-specific and is related to > Bio::Graphics::FeatureFile: > > t/BioGraphics...... > 1..35 > ok 1 - use Bio::Graphics::FeatureFile; > ok 2 - use Bio::Graphics::Panel; > ok 3 > not ok 4 > > # Failed test at t/BioGraphics.t line 49. > # got: '7' > # expected: '5' > ok 5 > ok 6 > ok 7 > ok 8 > ... > > It appears to be coming from render() passing two extra tracks under > perl 5.10 over what is passed in perl 5.8. If anyone is running > perl 5.10, can they test this out? > > chris > _______________________________________________ > Bioperl-l mailing list > [EMAIL PROTECTED] > http://lists.open-bio.org/mailman/listinfo/bioperl-l Christopher Fields Postdoctoral Researcher Lab of Dr. Robert Switzer Dept of Biochemistry University of Illinois Urbana-Champaign ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Gmod-gbrowse mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
