Sheldon McKay wrote: > Hi Wes, > > The first issue should be resolved. The javascript > navigation/selection object should now be smart enough to refuse to > fall off the ends of the chromosome. The second issue should also be > resolved.
Thanks. These are both working correctly for me now. > Sheldon > > On Mon, Feb 25, 2008 at 6:45 PM, Wes Barris <[EMAIL PROTECTED]> wrote: >> Sheldon McKay wrote: >> > Hi Wes, >> > >> >>> As always, thanks for the bug reports. Clicking on features should >> > have the correct behavior now. The debugging info should also no >> > longer accumulate in your error log. I am not able to reproduce the >> > issue with clicking on the ends of the overview or region panels. >> > Could you please provide details of your browser/OS and an error >> > messages in the apache error log or javascript console? >> >> Thanks. Clicking on features with draggable tracks disabled now works >> properly and there is no more debugging in the error_log. I can see >> two problems that remain: >> >> 1) I can click anywhere within the span of the chromosome displayed in >> the gray overview area to re-center the display. However, if I click >> to the left of the chromosome (but still within the gray area) or to >> the right of the chromosome (but still within the gray area), I get >> this error displayed in the gbrowse page: >> >> The landmark named BTA1:-2911344..-2011344 is not recognized. See the >> help pages for suggestions. >> >> Try it: http://www.livestockgenomics.csiro.au/perl/gbrowse.cgi/bova4/ >> >> I'm using a CVS check of gbrowse today. Firefox 2.0.0.12. CentOS >> release 4.6 (Final) >> No errors are listed in the web server error log nor the javascript error >> console. >> >> 2) When draggable tracks are enabled, the track categories are not >> displayed. >> Using http://www.livestockgenomics.csiro.au/perl/gbrowse.cgi/bova4/ >> display Cow Refseq mRNA and Human Refseq. With draggable tracks >> disabled, >> the details area clearly shows the "Cow" and "Human" categories in >> parentheses. >> Now enable draggable tracks. The categories are no longer displayed in >> the >> details area. >> >> >> >> >> > Thanks, >> > Sheldon >> > >> > >> > On Sun, Feb 24, 2008 at 7:05 PM, Wes Barris <[EMAIL PROTECTED]> wrote: >> >> Sheldon McKay wrote: >> >> > Hi Wes, >> >> > >> >> > I have done some work on this. Please try a new checkout and let me >> >> > know if this is still a problem. >> >> >> >> Hi Sheldon, >> >> >> >> I just did a CVS checkout and installed. The problem described below >> >> still exists. Additionally, I can no longer click on a displayed >> feature >> >> and display its details page (when draggable tracks are turned off). I >> >> also notice that for each feature displayed, a lot of debugging is being >> >> written into the web server error_log file. The debugging info looks >> like >> >> this: >> >> >> >> <span >> style="left:49px;width:611px;top:340px;cursor:pointer;position:absolute;height:33px;" >> name="detail_image_map" title="Refseq mRNA: BTA1:15252826..15252986 >> XM_871051.2:1..161" >> >> onclick="function(){window.location = >> '../../gbrowse_details.cgi/bova4?name=XM_871051.2;class=Accession'}" ></span> >> >> >> >> >> >> >> >> >> >> >> >> > Sheldon >> >> > >> >> > On Feb 19, 2008 11:07 PM, Wes Barris <[EMAIL PROTECTED]> wrote: >> >> >> Hi, >> >> >> >> >> >> When draggable tracks are turned off (check box unticked), I am not >> able to >> >> >> pan or zoom by clicking on the chromosome in the Overview or Region >> areas. >> >> >> >> >> >> If I tick the Draggable tracks box and then click on "Update Image" >> I can >> >> >> pan and zoom by clicking (and dragging) on the chromosome in the >> Overview >> >> >> and Region areas. >> >> >> >> >> >> However, if I want to go to either end of the chromosome, I used to >> be able >> >> >> to click just before the beginning (or just past the end) of the >> chromosome >> >> >> to display either end. If I do this now, I get an error like this: >> >> >> >> >> >> The landmark named BTA1:-2463827..-1563827 is not recognized. See >> the help pages for suggestions. >> >> >> >> >> >> I am using a CVS version of gbrowse that is roughly three weeks old. >> >> >> -- >> >> >> Wes Barris <[EMAIL PROTECTED]> >> >> >> >> >> >> >> ------------------------------------------------------------------------- >> >> >> This SF.net email is sponsored by: Microsoft >> >> >> Defy all challenges. Microsoft(R) Visual Studio 2008. >> >> >> http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ >> >> >> _______________________________________________ >> >> >> Gmod-gbrowse mailing list >> >> >> [email protected] >> >> >> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse >> >> >> >> >> > >> >> > >> >> > >> >> >> >> >> >> -- >> >> Wes Barris <[EMAIL PROTECTED]> >> >> >> > >> > >> > >> >> >> -- >> Wes Barris <[EMAIL PROTECTED]> >> > > > -- Wes Barris <[EMAIL PROTECTED]> ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Gmod-gbrowse mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
