Hi Vincent, as a temporary workaround, after the ./configure step, you can edit by hand the "variables" file...
Cheers, Dave -- David Colignon, Ph.D. Collaborateur Logistique du F.R.S.-FNRS CÉCI - Consortium des Équipements de Calcul Intensif ACE - Applied & Computational Electromagnetics Sart-Tilman B28 Université de Liège 4000 Liège - BELGIQUE Tél: +32 (0)4 366 37 32 Fax: +32 (0)4 366 29 10 WWW: http://hpc.montefiore.ulg.ac.be/ Agenda: http://www.google.com/calendar/embed?src=david.colignon%40gmail.com Vincent Letocart wrote: > On 27 January 2009, at 14:03:24 (Epoch+1233061404 sec), Vincent Letocart > wrote : >> On 26 January 2009, at 18:55:00 (Epoch+1232992500 sec), Christophe Geuzaine >> wrote : >>> Vincent Letocart wrote: >>>> Hi everyone >>>> >>>> I'm currently trying to compile gmsh 2.3.0 but I'm hitting >>>> trubbles with flag --enable-fm. >>>> >>>> It is related to a library called FourierModel but I can't >>>> find any source code in the tarball related to this option. >>> Hi Vincent - that's normal: the FourierModel library is not publicly >>> available. >> This is why. OK. >> >> Can you also explain why I then can't compile ? >> >> I use the configure script like this to get it compiled in my home directory >> (med, fltk and gsl are already intalled), compilers are from Intel (CC=icc, >> CXX=icpc) >> >> ./configure CPPFLAGS="-DTRUE=1 -DFALSE=0 -I${BORISPREFIX}/include64" >> CFLAGS="-I${BORISPREFIX}/include64" CXXFLAGS="-I${BORISPREFIX}/include64" >> LDFLAGS="-L${BORISPREFIX}/lib64 -lmkl -liomp5 -lpthread" >> --prefix=${BORISPREFIX} --libdir=${BORISPREFIX}/lib64 GMSH_LIBS='-lmkl >> -liomp5 -lpthread' --enable-hdf5 >> --with-hdf5-prefix=${BORISPREFIX}/hdf5-1.6.5-64 --enable-tree-browser >> --enable-med --with-med-prefix=${BORISPREFIX} --disable-fm --enable-shared >> --disable-chaco --disable-gui >> >> A while after the 'make', I got a tremendous amout of C++ insults :-) >> Investigating shows a strange behaviour as follow in that excerpt from the >> produced output: >> >> >> == begin == >> icpc -I/home/vincentl/.usr/local/include64 >> -I/home/vincentl/.usr/local/include >> -I/home/vincentl/.usr/local/hdf5-1.6.5-64/include -I../Numeric -I../Common >> -I../Geo -I../Mesh -I../Post -I../contrib/Tetgen -I../contrib/Netgen >> -I../contrib/Netgen/libsrc/include -I../contrib/Netgen/libsrc/interface >> -I../contrib/ANN/include -I../contrib/Metis -I../contrib/MathEval >> -I../contrib/gmm -c qualityMeasures.cpp >> icpc -I/home/vincentl/.usr/local/include64 >> -I/home/vincentl/.usr/local/include >> -I/home/vincentl/.usr/local/hdf5-1.6.5-64/include -I../Numeric -I../Common >> -I../Geo -I../Mesh -I../Post -I../contrib/Tetgen -I../contrib/Netgen >> -I../contrib/Netgen/libsrc/include -I../contrib/Netgen/libsrc/interface >> -I../contrib/ANN/include -I../contrib/Metis -I../contrib/MathEval >> -I../contrib/gmm -c BoundaryLayers.cpp >> ../Geo/GVertex.h(19): warning #654: overloaded virtual function >> "GEntity::getNumMeshElements" is only partially overridden in class "GVertex" >> class GVertex : public GEntity >> ^ >> >> icpc -I/home/vincentl/.usr/local/include >> -I/home/vincentl/.usr/local/hdf5-1.6.5-64/include -I../Numeric -I../Common >> -I../Geo -I../Mesh -I../Post -I../contrib/Tetgen -I../contrib/Netgen >> -I../contrib/Netgen/libsrc/include -I../contrib/Netgen/libsrc/interface >> -I../contrib/ANN/include -I../contrib/Metis -I../contrib/MathEval >> -I../contrib/gmm -c BDS.cpp >> ../Numeric/GmshMatrix.h(272): catastrophic error: could not open source file >> "gsl/gsl_linalg.h" >> #include <gsl/gsl_linalg.h> >> ^ >> == end == >> >> >> The question is : >> >> As I generated 64-bits binaries for gsl 1.12 and put the libs and include >> files in (respectively) .../lib64 and .../include64 dirs, I also tried in >> many >> ways to tell it through the configure script, but those icpc actions just >> CUT OFF the "-I/home/vincentl/.usr/local/include64" directive I added... >> >> Did I miss another detail somewhere ? >> >> Thanks by advance > > > I'am still trying... and I have another question > > While the configure scripts tells the LIBS variable may be used: > > Some influential environment variables: > CC C compiler command > CFLAGS C compiler flags > LDFLAGS linker flags, e.g. -L<lib dir> if you have libraries in a > nonstandard directory <lib dir> > LIBS libraries to pass to the linker, e.g. -l<library> > CPPFLAGS C/C++/Objective C preprocessor flags, e.g. -I<include > dir> if > you have headers in a nonstandard directory <include dir> > CXX C++ compiler command > CXXFLAGS C++ compiler flags > CPP C preprocessor > F77 Fortran 77 compiler command > FFLAGS Fortran 77 compiler flags > CXXCPP C++ preprocessor > > and I use it: > > ./configure CXXFLAGS="-I${BORISPREFIX}/hdf5-1.6.5-64/include64 -O3 -mp > -openmp" > LDFLAGS="-L${BORISPREFIX}/lib64 -L${BORISPREFIX}/hdf5-1.6.5-64/lib64" > LIBS="-lmkl -liomp5 -lpthread" --prefix=${BORISPREFIX} --disable-gui > --disable-tetgen > --enable-med --enable-gsl > > The compile process stops at the very last link step without using those > libraries coming > from the Intel Compiler : > > > icpc -I/home/vincentl/.usr/local/hdf5-1.6.5-64/include64 -O3 -mp > -openmp -o bin/gmsh -Llib Common/Main.o -lGmshCommon -lGmshMesh -lGmshGeo > -lGmshPost -lGmshPlugin -lGmshParser -lGmshCommon -lGmshNumeric -lGmshANN > -lGmshChaco -lGmshMetis -lGmshNetgen -lGmshMathEval -lmed -lhdf5 -lz -lgsl > -lgslcblas -lm > Common/Main.o: In function `main': > Main.cpp:(.text+0xb4): undefined reference to > `GModel::GModel(std::string)' > Main.cpp:(.text+0xfa): undefined reference to `GmshInitialize(int, > char**)' > Main.cpp:(.text+0x105): undefined reference to `CTX' > Main.cpp:(.text+0x10b): undefined reference to `CTX' > Main.cpp:(.text+0x110): undefined reference to `GmshBatch()' > Main.cpp:(.text+0x115): undefined reference to `GmshFinalize()' > Main.cpp:(.text+0x11c): undefined reference to `Msg::Exit(int)' > Main.cpp:(.text+0x19b): undefined reference to `CTX' > Main.cpp:(.text+0x1a8): undefined reference to `Print_Usage(char > const*)' > make: *** [link] Error 1 > > Again: what did I do wrong ? > > Vincent. > > _______________________________________________ gmsh mailing list [email protected] http://www.geuz.org/mailman/listinfo/gmsh
