Hi Dave, Thank you very much for helping me. It works well now :D. - Ranjith
On Tue, Jun 2, 2009 at 2:41 PM, David Colignon <[email protected]>wrote: > > configure is not able to compile a test program with the blas library : > > > > configure:5544: checking for dgemm_ in -lblas > > configure:5579: g++ -o conftest -g -O2 -L/usr/lib/ -L/usr/lib//lib > conftest.cpp -lblas -lgfortran -lm >&5 > > /usr/bin/ld: cannot find -lgfortran > > collect2: ld returned 1 exit status > > configure:5585: $? = 1 > configure: failed program was: > | /* confdefs.h. */ > | #define PACKAGE_NAME "" > | #define PACKAGE_TARNAME "" > | #define PACKAGE_VERSION "" > | #define PACKAGE_STRING "" > | #define PACKAGE_BUGREPORT "" > | #define HAVE_FLTK 1 > | #define HAVE_TREE_BROWSER 1 > | #define HAVE_LIBJPEG 1 > | #define HAVE_LIBPNG 1 > | #define HAVE_LIBM 1 > | #define HAVE_ANN 1 > | #define HAVE_GMM 1 > | #define HAVE_CHACO 1 > | #define HAVE_METIS 1 > | #define HAVE_NETGEN 1 > | #define HAVE_MATH_EVAL 1 > | #define HAVE_LIBZ 1 > | /* end confdefs.h. */ > | > | /* Override any GCC internal prototype to avoid an error. > | Use char because int might match the return type of a GCC > | builtin and then its argument prototype would still apply. */ > | #ifdef __cplusplus > | extern "C" > | #endif > | char dgemm_ (); > | int > | main () > | { > | return dgemm_ (); > | ; > | return 0; > | } > configure:5603: result: no > > > > the problem may perhaps comes from the ordrering of the directories in your > $PATH. Configure detects GCC in > /home/velan/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux/bin/gcc , which is > GCC version 4.3.1 , but detects gfortran in /usr/bin/gfortran , which is > version 4.3.2 > > can you try to configure Gmsh with : > > ./configure --prefix=/home/soft/gmsh-2.3.1 > --with-blas-lapack-prefix=/usr/lib/ CC=/usr/bin/gcc CXX=/usr/bin/g++ > FC=/usr/bin/gfortran > > Cheers, > > Dave > > > -- > David Colignon, Ph.D. > Collaborateur Logistique du F.R.S.-FNRS > CÉCI - Consortium des Équipements de Calcul Intensif > ACE - Applied & Computational Electromagnetics > Sart-Tilman B28 > Université de Liège > 4000 Liège - BELGIQUE > Tél: +32 (0)4 366 37 32 > Fax: +32 (0)4 366 29 10 > WWW: http://hpc.montefiore.ulg.ac.be/ > Agenda: > http://www.google.com/calendar/embed?src=david.colignon%40gmail.com > > > > Vadivelan C wrote: > >> I have attached the config.log file. >> >> - Ranjith >> >> On Tue, Jun 2, 2009 at 1:44 PM, David Colignon >> <[email protected]<mailto: >> [email protected]>> wrote: >> >> Can you send us your config.log file ? >> >> >> Dave >> >> -- David Colignon, Ph.D. >> Collaborateur Logistique du F.R.S.-FNRS >> CÉCI - Consortium des Équipements de Calcul Intensif >> ACE - Applied & Computational Electromagnetics >> Sart-Tilman B28 >> Université de Liège >> 4000 Liège - BELGIQUE >> Tél: +32 (0)4 366 37 32 >> Fax: +32 (0)4 366 29 10 >> WWW: http://hpc.montefiore.ulg.ac.be/ >> Agenda: >> http://www.google.com/calendar/embed?src=david.colignon%40gmail.com >> >> >> >> Vadivelan C wrote: >> >> Hi Dave, >> >> Thanks for your quick reply. BTW, i have installed lapack, blas >> libraries using yum. I have checked >> >> [ve...@scram ~]$ ls /usr/lib/{*lapack*,*blas.*} >> -rw-r--r-- 1 root root 5.6M 2008-07-08 22:58 /usr/lib/liblapack.a >> -rw-r--r-- 1 root root 483K 2008-07-08 22:58 /usr/lib/libblas.a >> -rwxr-xr-x 1 root root 4.0M 2008-07-08 22:58 >> /usr/lib/liblapack.so.3.1.1 >> -rw-r--r-- 1 root root 6.1M 2008-07-08 22:58 >> /usr/lib/liblapack_pic.a >> -rwxr-xr-x 1 root root 354K 2008-07-08 22:58 >> /usr/lib/libblas.so.3.1.1 >> -rwxr-xr-x 1 root root 221K 2008-09-16 13:25 >> /usr/lib/libgslcblas.so.0.0.0 >> lrwxrwxrwx 1 root root 20 2009-05-31 19:51 >> /usr/lib/libgslcblas.so.0 -> libgslcblas.so.0.0.0 >> lrwxrwxrwx 1 root root 16 2009-06-02 11:21 >> /usr/lib/libblas.so.3.1 -> libblas.so.3.1.1 >> lrwxrwxrwx 1 root root 16 2009-06-02 11:21 >> /usr/lib/libblas.so.3 -> libblas.so.3.1.1 >> lrwxrwxrwx 1 root root 18 2009-06-02 11:21 >> /usr/lib/liblapack.so.3.1 -> liblapack.so.3.1.1 >> lrwxrwxrwx 1 root root 18 2009-06-02 11:21 >> /usr/lib/liblapack.so.3 -> liblapack.so.3.1.1 >> lrwxrwxrwx 1 root root 18 2009-06-02 11:21 >> /usr/lib/liblapack.so -> liblapack.so.3.1.1 >> lrwxrwxrwx 1 root root 16 2009-06-02 11:21 /usr/lib/libblas.so >> -> libblas.so.3.1.1 >> >> Which shows, lapack library was installed. During gmsh >> installation i have done following steps >> >> ./configure --prefix=/home/soft/gmsh-2.3.1 >> --with-blas-lapack-prefix=/usr/lib/ >> >> But still i am getting those errors. Can you tell me how to find >> whether lapack/blas libraries was configured during gmsh >> installation. I couldnt find anything on config.status files. >> >> Thanks >> - Ranjith >> >> On Tue, Jun 2, 2009 at 12:56 PM, David Colignon >> <[email protected] <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>> wrote: >> >> Hi, >> >> it just means that you have to install the lapack library or >> that >> the library was not found at the ./configure step when you >> compiled >> gmsh. >> >> Cheers, >> >> Dave >> >> -- David Colignon, Ph.D. >> Collaborateur Logistique du F.R.S.-FNRS >> CÉCI - Consortium des Équipements de Calcul Intensif >> ACE - Applied & Computational Electromagnetics >> Sart-Tilman B28 >> Université de Liège >> 4000 Liège - BELGIQUE >> Tél: +32 (0)4 366 37 32 >> Fax: +32 (0)4 366 29 10 >> WWW: http://hpc.montefiore.ulg.ac.be/ >> Agenda: >> >> http://www.google.com/calendar/embed?src=david.colignon%40gmail.com >> >> >> >> Vadivelan C wrote: >> >> Hi >> >> I'm newbie to gmsh package. I installed gmsh without any >> problem. I tried to work on tutorials. I got the error >> message >> when i load tutorial/t5.geo >> >> >> Info : >> ------------------------------------------------------- >> Info : Gmsh version : 2.3.1 >> Info : Build OS : Linux >> Info : Build options : Fltk TreeBrowser Jpeg Png Ann Gmm >> Chaco Metis Netgen MathEval Libz >> Info : Build date : Tue Jun 2 11:23:42 IST 2009 >> Info : Build host : scram >> Info : Packager : root >> Info : Home directory : /home/velan/ >> Info : Launch date : Tue Jun 2 11:33:18 2009 >> Info : Command line : gmsh >> Info : >> ------------------------------------------------------- >> Info : Reading >> '/home/velan/Download/PACKAGE/gmsh-2.3.1/tutorial/t5.geo' >> Hole 1 (center = {0.166,0.75,0.166}, radius = 0.09) has >> number 69! >> Hole 2 (center = {0.332,0.75,0.332}, radius = 0.09) has >> number 99! >> Hole 3 (center = {0.498,0.75,0.498}, radius = 0.09) has >> number 129! >> Hole 4 (center = {0.664,0.75,0.664}, radius = 0.09) has >> number 159! >> Hole 5 (center = {0.83,0.75,0.83}, radius = 0.09) has >> number 189! >> Error : Singular value decomposition requires LAPACK >> Error : Singular value decomposition requires LAPACK >> Error : Singular value decomposition requires LAPACK >> Error : Singular value decomposition requires LAPACK >> Error : Singular value decomposition requires LAPACK >> Error : Singular value decomposition requires LAPACK >> Error : Singular value decomposition requires LAPACK >> Error : Singular value decomposition requires LAPACK >> Error : Singular value decomposition requires LAPACK >> >> >> Please let me know if you have any idea about this error >> message. >> >> - Ranjith >> >> >> >> ------------------------------------------------------------------------ >> >> _______________________________________________ >> gmsh mailing list >> [email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> >> http://www.geuz.org/mailman/listinfo/gmsh >> >> >> >> >> >> >
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