gmx-users

Messages by Date

2013/10/30 Re: [gmx-users] single point calculation with gromacs Justin Lemkul
2013/10/30 [gmx-users] pbc off jwillcox
2013/10/30 [gmx-users] binding energy (score) of single trajectory frames Knapp Bernhard
2013/10/30 [gmx-users] single point calculation with gromacs fantasticqhl
2013/10/30 [gmx-users] Re: periodic surface minimization escajarro
2013/10/30 Re: [gmx-users] continuing the terminated simulation Pavan Ghatty
2013/10/30 Re: [gmx-users] Lysozime in Water jkrieger
2013/10/30 [gmx-users] Lysozime in Water Negar Parvizi
2013/10/30 Re: [gmx-users] continuing the terminated simulation Ankita Naithani
2013/10/30 [gmx-users] continuing the terminated simulation delara aghaie
2013/10/29 Re: [gmx-users] RE: Gibbs Energy Calculation and charges Michael Shirts
2013/10/29 [gmx-users] RE: Gibbs Energy Calculation and charges Dallas Warren
2013/10/29 [gmx-users] Simulate partially hydrolized polyacrylamide in solutions qugm...@126.com
2013/10/29 Re: [gmx-users] hydrogen bond analysis Justin Lemkul
2013/10/29 Re: [gmx-users] g_rotacf error Justin Lemkul
2013/10/29 Re: [gmx-users] pbc problem Justin Lemkul
2013/10/29 [gmx-users] hydrogen bond analysis larif sofiene
2013/10/29 Aw: Re: [gmx-users] Constant-Force Pulling of Ubiquitin lloyd riggs
2013/10/29 Re: [gmx-users] virtual sites Roland Schulz
2013/10/29 [gmx-users] g_rotacf error Tiago Gomes
2013/10/29 Re: [gmx-users] Constant-Force Pulling of Ubiquitin XAvier Periole
2013/10/29 Re: [gmx-users] pbc problem Mark Abraham
2013/10/29 [gmx-users] Constant-Force Pulling of Ubiquitin Vivian
2013/10/29 [gmx-users] pbc problem shahab shariati
2013/10/29 [gmx-users] Constant-Force Pulling of Ubiquitin Weiwei Tao
2013/10/29 Re: [gmx-users] virtual sites Justin Lemkul
2013/10/29 Re: [gmx-users] mdrun cpt Mark Abraham
2013/10/28 [gmx-users] virtual sites Neha Gandhi
2013/10/28 Re: [gmx-users] lmc-stats Michael Shirts
2013/10/28 [gmx-users] lmc-stats Andrew S. Paluch
2013/10/28 Re: [gmx-users] mdrun cpt Pavan Ghatty
2013/10/28 Re: [gmx-users] Re: gmx-users Digest, Vol 114, Issue 15 Justin Lemkul
2013/10/28 Re: [gmx-users] Re: gmx-users Digest, Vol 114, Issue 15 Hari Pandey
2013/10/28 Re: [gmx-users] Re: gmx-users Digest, Vol 114, Issue 15 Justin Lemkul
2013/10/28 Re: [gmx-users] Re: gmx-users Digest, Vol 114, Issue 15 Hari Pandey
2013/10/28 Re: [gmx-users] How can I increase maximum number of pulling step for energy minimization? Justin Lemkul
2013/10/28 Re: [gmx-users] Re: gmx-users Digest, Vol 114, Issue 15 Mark Abraham
2013/10/28 Re: [gmx-users] mdrun cpt Mark Abraham
2013/10/28 Re: [gmx-users] Failure in MD run without any error Mark Abraham
2013/10/28 Re: [gmx-users] Obtaining trajectory coordinates at all dt Mark Abraham
2013/10/28 Re: [gmx-users] Replica Exchange with Solute Tempering Andrew Ritchie
2013/10/28 [gmx-users] Failure in MD run without any error niloofar niknam
2013/10/28 Re: [gmx-users] mdrun cpt jkrieger
2013/10/28 Re: [gmx-users] mdrun cpt Pavan Ghatty
2013/10/28 Re: [gmx-users] mdrun cpt jkrieger
2013/10/28 [gmx-users] Re: gmx-users Digest, Vol 114, Issue 15 Hari Pandey
2013/10/28 [gmx-users] Obtaining trajectory coordinates at all dt Xu Dong Huang
2013/10/28 Re: [gmx-users] mdrun cpt Pavan Ghatty
2013/10/28 [gmx-users] How can I increase maximum number of pulling step for energy minimization? Gwonchan Yoon
2013/10/28 Re: [gmx-users] parmbsc0 force field Justin Lemkul
2013/10/28 Re: [gmx-users] mdrun cpt Mark Abraham
2013/10/28 Re: [gmx-users] mdrun cpt Pavan Ghatty
2013/10/28 [gmx-users] parmbsc0 force field kiana moghaddam
2013/10/28 [gmx-users] Suggestion for a project Asaf Farhi
2013/10/28 [gmx-users] PLUMED2 official release Carlo Camilloni
2013/10/28 Re: [gmx-users] Gromacs tutorials for binding free energy analysis Justin Lemkul
2013/10/28 [gmx-users] Gromacs tutorials for binding free energy analysis Sajad Ahrari
2013/10/28 Re: [gmx-users] Charges in vacuum simulation Dr. Vitaly Chaban
2013/10/28 Re: [gmx-users] pdb2gmx conversion Tsjerk Wassenaar
2013/10/28 [gmx-users] pdb2gmx conversion MUSYOKA THOMMAS
2013/10/28 Re: [gmx-users] g_hbond and g_rdf in vacuum Justin Lemkul
2013/10/28 [gmx-users] Charges in vacuum simulation Richa Singh
2013/10/28 [gmx-users] Re: gmx-users Digest, Vol 114, Issue 75 Santu Biswas
2013/10/27 Re: [gmx-users] How To SOLVATE Justin Lemkul
2013/10/27 [gmx-users] How To SOLVATE Hari Pandey
2013/10/27 [gmx-users] *** Extended deadline *** CfP: 4th International Workshop on Model-driven Approaches for Simulation Engineering part of the Symposium on Theory of Modeling and Simulation (SCS SpringSim 2014) Daniele Gianni
2013/10/27 Re: [gmx-users] pbc problem Mark Abraham
2013/10/27 Re: [gmx-users] pbc problem Justin Lemkul
2013/10/27 [gmx-users] pbc problem shahab shariati
2013/10/27 Re: [gmx-users] error in umbralla sampling step 6 Justin Lemkul
2013/10/27 Re: [gmx-users] mdrun cpt Justin Lemkul
2013/10/27 [gmx-users] error in umbralla sampling step 6 sunyeping
2013/10/27 Re: [gmx-users] pbc problem Tsjerk Wassenaar
2013/10/27 [gmx-users] pbc problem shahab shariati
2013/10/27 [gmx-users] mdrun cpt Pavan Ghatty
2013/10/27 [gmx-users] pbc problem shahab shariati
2013/10/27 Re: [gmx-users] pbc problem Justin Lemkul
2013/10/27 Re: 答复: [gmx-users] error in umbralla sampling step 6 Justin Lemkul
2013/10/27 [gmx-users] pbc problem shahab shariati
2013/10/27 [gmx-users] RE:Requests lloyd riggs
2013/10/26 Re: [gmx-users] Replica Exchange with Solute Tempering HANNIBAL LECTER
2013/10/26 Re: [gmx-users] Replica Exchange with Solute Tempering David Osguthorpe
2013/10/26 Re: [gmx-users] Replica Exchange with Solute Tempering Michael Shirts
2013/10/26 [gmx-users] Replica Exchange with Solute Tempering David Osguthorpe
2013/10/26 Re: [gmx-users] Re: gmx-users Digest, Vol 114, Issue 64 Mark Abraham
2013/10/26 Re: [gmx-users] error in umbralla sampling step 6 Justin Lemkul
2013/10/26 [gmx-users] error in umbralla sampling step 6 sunyeping
2013/10/26 [gmx-users] two warnings in umbralla sampling step 6 sunyeping
2013/10/26 [gmx-users] Re: gmx-users Digest, Vol 114, Issue 64 Santu Biswas
2013/10/26 Re: [gmx-users] Problem with reading AMBER trajectories Mark Abraham
2013/10/26 [gmx-users] RE: 2D umbrella sampling simulation mjyang
2013/10/26 Re: [gmx-users] Problem with reading AMBER trajectories anu chandra
2013/10/25 Re: [gmx-users] Problem with reading AMBER trajectories anu chandra
2013/10/25 Re: [gmx-users] energy drift - comparison of double and single precision Michael Shirts
2013/10/25 Re: [gmx-users] Lie method for binding free energy calculations Andrea Spitaleri
2013/10/25 Re: [gmx-users] Lie method for binding free energy calculations Justin Lemkul
2013/10/25 Re: [gmx-users] Lie method for binding free energy calculations Justin Lemkul
2013/10/25 Re: [gmx-users] Lie method for binding free energy calculations Justin Lemkul
2013/10/25 [gmx-users] Lie method for binding free energy calculations Sajad Ahrari
2013/10/25 Re: [gmx-users] energy drift - comparison of double and single precision Guillaume Chevrot
2013/10/25 Re: [gmx-users] GPU-gromacs Carsten Kutzner
2013/10/25 [gmx-users] GPU-gromacs aixintiankong
2013/10/25 Re: [gmx-users] Optimizing performance mac osx Mark Abraham
2013/10/25 [gmx-users] 2D umbrella sampling simulation Christopher Neale
2013/10/25 [gmx-users] Wall potential for a membrane-simulation Marianne Schulte
2013/10/25 [gmx-users] Optimizing performance mac osx Tiago Gomes
2013/10/25 Re: [gmx-users] Gromos54a8 rajat desikan
2013/10/25 Re: [gmx-users] Gromos54a8 Djurre de Jong-Bruinink
2013/10/24 [gmx-users] RE: 2D umbrella sampling simulation mjyang
2013/10/24 [gmx-users] 2D umbrella sampling simulation Christopher Neale
2013/10/24 Re: [gmx-users] Re: a new GROMACS simulation tool houyang chen
2013/10/24 [gmx-users] Re: a new GROMACS simulation tool sri2201
2013/10/24 Re: [gmx-users] TFE-water simulation Justin Lemkul
2013/10/24 Re: [gmx-users] nstcalclr bug? Andrea Spitaleri
2013/10/24 Re: [gmx-users] TFE-water simulation Archana Sonawani-Jagtap
2013/10/24 [gmx-users] 2D umbrella sampling simulation mjyang
2013/10/24 [gmx-users] gmxdump segmentation fault Sarlo, Jeffrey S
2013/10/24 Re: [gmx-users] Re: meaning of the parameters in gbsa.itp Mark Abraham
2013/10/24 Re: [gmx-users] pbc problem Mark Abraham
2013/10/24 [gmx-users] Re: meaning of the parameters in gbsa.itp Corina Mo
2013/10/24 Re: [gmx-users] nstcalclr bug? Mark Abraham
2013/10/24 Re: [gmx-users] Output pinning for mdrun Mark Abraham
2013/10/24 Re: [gmx-users] meaning of the parameters in gbsa.itp Justin Lemkul
2013/10/24 Re: [gmx-users] Output pinning for mdrun Szilárd Páll
2013/10/24 Re: [gmx-users] meaning of the parameters in gbsa.itp Justin Lemkul
2013/10/24 [gmx-users] meaning of the parameters in gbsa.itp Corina Mo
2013/10/24 Re: [gmx-users] meaning of the parameters in gbsa.itp Coco Mo
2013/10/24 Re: [gmx-users] nstcalclr bug? jkrieger
2013/10/24 [gmx-users] nstcalclr bug? Andrea Spitaleri
2013/10/24 Re: [gmx-users] pbc problem Justin Lemkul
2013/10/24 [gmx-users] pbc problem shahab shariati
2013/10/24 Re: [gmx-users] Output pinning for mdrun Carsten Kutzner
2013/10/24 Re: [gmx-users] Output pinning for mdrun Mark Abraham
2013/10/24 Re: [gmx-users] Genion error Justin Lemkul
2013/10/24 Re: [gmx-users] Genion error felipe vasquez
2013/10/24 Re: [gmx-users] Genion error Justin Lemkul
2013/10/24 [gmx-users] Genion error felipe vasquez
2013/10/24 Re: [gmx-users] Gromos54a8 rajat desikan
2013/10/24 Re: [gmx-users] Gromos54a8 Justin Lemkul
2013/10/24 Re: [gmx-users] Gromos54a8 rajat desikan
2013/10/24 Re: [gmx-users] Gromos54a8 Justin Lemkul
2013/10/24 Re: [gmx-users] cant find certain atomtypes from atomtype database Justin Lemkul
2013/10/24 Re: [gmx-users] g_hbond and g_rdf in vacuum Mark Abraham
2013/10/24 Re: [gmx-users] pbc problem Mark Abraham
2013/10/24 [gmx-users] Gromos54a8 rajat desikan
2013/10/24 [gmx-users] Output pinning for mdrun Carsten Kutzner
2013/10/24 [gmx-users] g_hbond and g_rdf in vacuum Santu Biswas
2013/10/23 [gmx-users] pbc problem shahab shariati
2013/10/23 [gmx-users] cant find certain atomtypes from atomtype database JuYeon
2013/10/23 Re: [gmx-users] Re: a new GROMACS simulation tool Kieu Thu Nguyen
2013/10/23 Re: [gmx-users] converting pdb of protein+ATP+water+ion into gromacs files Dina Mirijanian
2013/10/23 Re: [gmx-users] converting pdb of protein+ATP+water+ion into gromacs files Justin Lemkul
2013/10/23 [gmx-users] converting pdb of protein+ATP+water+ion into gromacs files Dina Mirijanian
2013/10/23 Re: [gmx-users] pbc problem Mark Abraham
2013/10/23 Re: [gmx-users] pbc problem jkrieger
2013/10/23 Aw: RE: [gmx-users] Continuing runs from 4.5.4 in 4.6.3 lloyd riggs
2013/10/23 Re: [gmx-users] list Justin Lemkul
2013/10/23 [gmx-users] list Michelangelo Scordino
2013/10/23 Re: [gmx-users] Re: a new GROMACS simulation tool houyang chen
2013/10/23 [gmx-users] Re: a new GROMACS simulation tool Villarealed
2013/10/23 Re: [gmx-users] a new GROMACS simulation tool Ashutosh singh
2013/10/23 [gmx-users] pbc problem shahab shariati
2013/10/23 Re: [gmx-users] a new GROMACS simulation tool Gabriele Lanaro
2013/10/23 Re: [gmx-users] a new GROMACS simulation tool jkrieger
2013/10/23 Re: [gmx-users] a new GROMACS simulation tool Ehsan Sadeghi
2013/10/23 Re: [gmx-users] a new GROMACS simulation tool Mark Abraham
2013/10/23 RE: [gmx-users] Continuing runs from 4.5.4 in 4.6.3 Kevin Chen
2013/10/23 Re: [gmx-users] a new GROMACS simulation tool Jeya vimalan
2013/10/23 Re: [gmx-users] TFE-water simulation Justin Lemkul
2013/10/23 Re: [gmx-users] Energy minimizations taking really, really long? Justin Lemkul
2013/10/23 Re: [gmx-users] Continuing runs from 4.5.4 in 4.6.3 rajat desikan
2013/10/23 [gmx-users] TFE-water simulation Archana Sonawani-Jagtap
2013/10/23 Re: [gmx-users] a new GROMACS simulation tool Thales Kronenberger
2013/10/23 Re: [gmx-users] Box size increases in NPT Mark Abraham
2013/10/23 Re: [gmx-users] Box size increases in NPT Dr. Vitaly Chaban
2013/10/23 Re: [gmx-users] Box size increases in NPT Mark Abraham
2013/10/23 Re: [gmx-users] Continuing runs from 4.5.4 in 4.6.3 Mark Abraham
2013/10/23 Re: [gmx-users] a new GROMACS simulation tool Gloria Saracino
2013/10/22 [gmx-users] Continuing runs from 4.5.4 in 4.6.3 rajat desikan
2013/10/22 [gmx-users] Re: Energy minimizations taking really, really long? shika
2013/10/22 [gmx-users] Box size increases in NPT Nilesh Dhumal
2013/10/22 [gmx-users] Energy minimizations taking really, really long? Nimmy McNimmerson
2013/10/22 Re: [gmx-users] Re: [gmx-developers] v4.6.3: cmake-stage error at CMakeLists.txt:102 Nikolay Alemasov
2013/10/22 Re: [gmx-users] Conflicting atom names when using g_density Justin Lemkul
2013/10/22 [gmx-users] Conflicting atom names when using g_density Bin Liu
2013/10/22 Re: [gmx-users] Regarding membrane(DMPC) simulations with fullerene Justin Lemkul
2013/10/22 RE: [gmx-users] a new GROMACS simulation tool Kevin Chen
2013/10/22 [gmx-users] Problems about the output force Qianqian Cao
2013/10/22 Re: [gmx-users] a new GROMACS simulation tool Michael Shirts
2013/10/22 [gmx-users] a new GROMACS simulation tool Kevin Chen
2013/10/22 Re: [gmx-users] Minimum distance between periodic images Nidhi Katyal
2013/10/22 [gmx-users] Regarding membrane(DMPC) simulations with fullerene Sathish Kumar
2013/10/22 Re: [gmx-users] Minimum distance between periodic images Tsjerk Wassenaar
2013/10/22 [gmx-users] Minimum distance between periodic images Nidhi Katyal
2013/10/22 Re: [gmx-users] regarding charge group Mark Abraham
2013/10/21 [gmx-users] regarding charge group Sathish Kumar
2013/10/21 [gmx-users] RE: Gibbs Energy Calculation and charges Dallas Warren
2013/10/21 Re: [gmx-users] CHARMM-GUI to GROMACS Zhi Yue
2013/10/21 Re: [gmx-users] CHARMM-GUI to GROMACS Justin Lemkul
2013/10/21 [gmx-users] CHARMM-GUI to GROMACS Zhi Yue