Hi GMXIONS,
I am trying to perform docking of em structure of RNA from gromacs
using Autodock. Initially I converted
the gro file to pdb formated. The force field I use for GROMACS for RNA
simulation is AMBER99. Now how to convert
the pdb output of RNA from gromacs to AutoDock pdbqs. I tried to use ADT
tool as I use it for protein , but It fails to recognize the new residue
types of AMBER99 specific (ie., RA5,RA3, RC...etc.,) .
Experienced out there help me to fix this problem.
With thanks !
B.Nataraj
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raja
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unladen european swallow
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