Hi all
I have a short question. Could you please tell me what do the
columns in pull.pdo (output file from AFM) stand for. Is there a
simple way to obtain forces from AFM pulling? Thank you for help.
Michal
As an example, with one pulling group, and pulling in 3D, the output
columns read:
Time, Reference group X, Reference group Y, Reference group Z, Pull
Group X, Pull Group Y, Pull Group Z, Spring X, Spring Y, Spring Z
for a total of 10 columns.
If you didn't pull in 3D, you'll only get output for the dimensions
where pulldim was set to Y in your .ppa file. I'm not sure how
multiple pull groups are handled.
I have a script to calculate the forces for pull runs using only one
pull group in 3 dimensions that I can share on request.
-Emily Walton
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