> > I added the RNA hydrogens to my ffG53a5.hdb file, which eliminated the > H2*, etc. missing from .hdb file errors.
1. Use the Amber FF files instead. (Requires some hand editing of the PDB file.) 2. Also build in my modifications to gromacs 3.3 from here http://saf.bio.caltech.edu/pub/software/molbio/gromacs-cit-33.tar.gz and you can probably just run your input PDB file through pdb2gmx using the Amber FF with no hand editing required. Regards, David Mathog [EMAIL PROTECTED] Manager, Sequence Analysis Facility, Biology Division, Caltech _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
