Dear All!
Thanks for your replies.My CPP path seems to be ok as far as the location is concerened and I continue to get the same error messsages.
Is there any other reason for that ( my top files also seem to be wroking for other simulations )
Need help ASAP.
Thanks again to you all.
Kris
On 4/4/06, Sukit Leekumjorn <[EMAIL PROTECTED]> wrote:
I had a similar problem before. Check and see if "cpp" is in
/usr/bin/cpp path. Sometime it is in /lib/cpp depending on your
operating system. You can check the location of cpp by typing "which
cpp" on the command line.
Hope this help, Sukit
Kushal Seth wrote:
>
>
> HI all !
> I am gettting this error while doing my simulation... for the
> bilayers
>
>
>
> Back Off! I just backed up emout-nowater.mdp to
> ./#emout-nowater.mdp.1#
> checking input for internal consistency...
> ...ling /usr/bin/cpp
> : No such file or directory
> cpp exit code: 32512
> -I/usr/local/gromacs/share/gromacs/top mytop-nowater1.top >
> gromppdriwHo'
> ' command is defined in the .mdp file
> processing topology...
> processing coordinates...
> -------------------------------------------------------
> Program grompp, VERSION 3.3
> Source code file: grompp.c, line: 427
>
> Fatal error:
> number of coordinates in coordinate file
> (binaryCR-Ochol-box-largeZ.pdb, 10280)
> does not match topology (mytop-nowater1.top, 0)
>
> I would appreciate if anyone can help me out with this.
> Thanks
> Kris
>
>
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