Viswanadham Sridhara wrote:
Hi everyone,

This is regarding implementation of time-dependent electric field on the system. I tried looking into the manual, and did a bit of survey in mailing lists. I still dont know how to implement E_zt in .mdp options. As an example, can anyone tell me how to implement a 5ns E (V/nm) trapezoidal pulse (1ns rise and fall times with 3ns pulse on time).

you can't.

please check the source code, src/mdlib/sim_util.c

Thanks in advance,
-Viswanadham.

--
Viswanadham Sridhara,
Graduate Research Assistant,
Old Dominion University,
Norfolk, VA-23529.


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--
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
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