Dear gromacs users,
I'm doing a MD simulation of protein in water. I freeze an atom in z
direction, e.g. freezdim N N Y, and afm pull another atom along -z direction,
e.g. afm_dir = 0 0 -1 afm_rate1 = 0.01 afm_init1 equals the coordinate of the
pulled atom. After about 200ps simulation, I found that the z coordinate of the
pulled atom dropped with string, however the z coordinate of the frozen atom
also dropped alot. I think z of the frozen atom should be constant, but why it
drops?
Waiting for your help.
Thanks a lot!
Linchen Gong
_______________________________________________
gmx-users mailing list [email protected]
http://www.gromacs.org/mailman/listinfo/gmx-users
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
