You fail to mention what type of simulation (EM? MD?) and how long you're trying to simulation (ps? ns? mus?). 8 hrs doesn't sound very long to me if it's for a production run. I usually count months. But then again, your system is in fact small to my standards ;)
Cheers,
Tsjerk
On 5/26/06, karamyog singh <[EMAIL PROTECTED]> wrote:
Dear gromaxers, I havea system of 6500 atoms. Gromacs shows that the simulation will take 8 hrs to complete the simulation. Is my system that large? The system is 15x15x15 units cells of Fe. so the the total box size is 4.305. I have tken cu-offs for LJ as 1.55. There is only LJ interaction. rslist is 1.55 too.
-karamyog
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Tsjerk A. Wassenaar, M.Sc.
Groningen Biomolecular Sciences and Biotechnology Institute (GBB)
Dept. of Biophysical Chemistry
University of Groningen
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