Anthony Cruz wrote:
Hi:
I want to run a simulation of a heme protein. I found that in the gromacs site the bug in the specbond.c and I download this file from bugzilla. I substitute this file in the source and try to build a new rpm to install. When I instal the new rpm and try to use pdb2gmx the progam stop with the followin error:

:-)  G  R  O  M  A  C  S  (-:

*** buffer overflow detected ***: pdb2gmx terminated
Aborted

How I could fix that???

please give more info, both on system size and on compilation, OS etc.

Thanks
Anthony
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--
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
[EMAIL PROTECTED]       [EMAIL PROTECTED]   http://folding.bmc.uu.se
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