raja wrote:
Thanks Mark for your reply,
I run MD for 1000000 (2ns) at dt = 0.002. In both occasion, shutdown
happened during mid night at around 7800 steps. I could not fix the
problem by looking at log file as it does not contain any information
regarding this.
Is it possible that the gromacs could influence the shutting down the
system because of it struck at some level during the computation?
One more additional information I would like to add here, I usually
prepare all necessary files prior to full MD simulation in my system
(windowsXP) and transform it to some other machine (windows2000) only
for final production phase of MD run. Can it be the cause?
no.
check system settings, maybe there is an autologout that kicks you out.
anyway this is not the right forum for this question.
With thanks!
B.Nataraj
On Mon, 12 Jun 2006 16:24:14 +1000, "Mark Abraham"
<[EMAIL PROTECTED]> said:
raja wrote:
Dear Gmxions,
While I run MD (Gromacs 3.3.1) in cygwin under windows2000 for
2ns, it shuts off automaticaly after 2days . It happened in two
different machine installed windows2000 professional. Any previous
experience by any of this sort ?
Not that I've heard of... are we talking 48 hours +/- 5 minutes or are
we talking anything between 30 and 60 hours? How many steps run? How big
are the output files?
But it works perfect for windowsXP.
So maybe the problem is with Windows 2000, not gromacs.
Mark
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________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
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