In VMD you can view .xtc files directly. Check the gromacs archive or the VMD manual. Besides, you can use trjconv with -b and -e to extract a certain time frame. Please check the Gromacs manual or try trjconv -h (also to find out what else is possible).
Best regards,
Tsjerk
On 6/13/06, lalitha selvam <[EMAIL PROTECTED]> wrote:
hello sir,
1.i ran simulation for 2 ns.....i want to view the structure from 1500 to
2000 frames at every 25 ps.how to get it in pdb strucutres of the above
wanted frames.
2.with the use of trjconv i had one pdb file converted from one frame. i'm
viewing that structure with VMD, but when i'm trying to load in NOC software
i'm not able to view.cant we view that pdb structures converted from gromacs
in other visualization software.
please anyone explain me.
regards
lali.s
_________________________________________________________________
Cox & Kings presents 'Win a trip for 2 to Austria' Contest. Click here
http://www.coxandkings.com/cms/products/specialpromotions/?link=view&CM_ID=78
_______________________________________________
gmx-users mailing list [email protected]
http://www.gromacs.org/mailman/listinfo/gmx-users
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [EMAIL PROTECTED].
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
--
Tsjerk A. Wassenaar, M.Sc.
Groningen Biomolecular Sciences and Biotechnology Institute (GBB)
Dept. of Biophysical Chemistry
University of Groningen
Nijenborgh 4
9747AG Groningen, The Netherlands
+31 50 363 4336
_______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
