In God We Trust
Hello Dr Biswas
Yes, our  run created  the output.pdb2gmx, output.grompp_em and output.mdrun_em. Output.pdb2gmx and output.grompp_em  haven't any error message but output.mdrun_em has an error .I attached it to this mail. 
Thank you very much in advance for your kindness and your reply.
Sincerely yours
Karim Mahnam
Institute of  Biochemistry  and  Biophysics (IBB)
Tehran University
P.O.box 13145-1384
Tehran
Iran
http://www.ibb.ut.ac.ir/
 

Attachment: output.mdrun_em
Description: Binary data

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