If you are referring to the output of g_anaeig, then the answer is yes. It's rarely conclusive, of course, but it give you a good idea of how your simulation is sampling space. A good plot would show lots of variation, whereas a bad plot would show a general drift.
Alan. --- Wei Fu <[EMAIL PROTECTED]> wrote: > Dear gmx users, > > Does the 2D projection plot has something to do with > convergence of the > trajectory? If so, what kind of shape of plot shows > the trajectory is > non-converged? > > Normally, I use RMSD plot to see if the trajectory > tends to converge. Now > my concern is how to see whether trajectory is > conserved or not based on > 2D projection analyses. > > Thanks in advance, > > Linda > > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please don't post (un)subscribe requests to the > list. Use the > www interface or send it to > [EMAIL PROTECTED] > Can't post? Read > http://www.gromacs.org/mailing_lists/users.php > __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
