Arneh Babakhani wrote:
Hello,
Can someone please describe the general procedure for PMF (potential of
mean force) calculations using GROMACS? Is there an analysis tool for
this (I didn't see one), or a combination of tools? (Please note: I'm
not asking for details. I'm just seeking a general method for
calculating PMF. I can work out the details, I'm just not sure where to
begin!).
maybe you want to check the section about AFM pulling in the manual.
Thank you kindly,
Arneh
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David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
[EMAIL PROTECTED] [EMAIL PROTECTED] http://folding.bmc.uu.se
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