The files are over 2gb and I'm using gromacs 3.3 on a linux cluster with amd64's (is that enough info? let me know if you need more).
The only frame info I get is counting through the frames being checked until it gets to the last (corrupt) one at 4550. Thanks for your help David. It's appreciated. In message <[EMAIL PROTECTED]> Discussion list for GROMACS users <[email protected]> writes: > Samantha Kaye wrote: > > When I tried to cat the results of that continuation file (started from > > 4500) it also has a magic number error at frame 910 (which is now in the > > second file) so I will try to truncate my trr file as suggested. > > > did you say what platform this is? are the files larger than 2Gb? > > > > One further question, how do I get gmxcheck to tell me this? I don't get > > any output other than the error message. Is there a verbose option in there > > somewhere? At the moment I'm just running gmxcheck -f file.trr > > > It should say how many frames there are etc. but maybe not if it crashes... > > > > > -- > David. > ________________________________________________________________________ > David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group, > Dept. of Cell and Molecular Biology, Uppsala University. > Husargatan 3, Box 596, 75124 Uppsala, Sweden > phone: 46 18 471 4205 fax: 46 18 511 755 > [EMAIL PROTECTED] [EMAIL PROTECTED] http://folding.bmc.uu.se > ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- Samantha Kaye Structural Bioinformatics and Computational Biochemistry Group University of Oxford _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
