I used 'genpr' to generate the 'posre.itp' file as I did
many other times
to restrain the entire protein leaving the solvent free.
Once I run 'grompp' I get the following message:
"Fatal error: [ file "1_Cter.top", line 7895 ]:
Atom index (152) in position_restraints out of bounds
(1-3)"
where atom 152 is the first atom in the protein that I
want to restraint.
It looks like the molecule you try to apply the position
restrain to is a solvent molecules (3 atoms). You should
check that grompp takes the right posres.itp for the
molecule.
XAvier
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