Hi XAvier, Thanks again, I meant the resistance caused due to dielectric of water separating two charged residues. I doubt whether it will allow the transfer of charge between them in order for hydrogen bond to be effected.
With regards, B.Nataraj On Thu, 03 Aug 2006 09:25:07 +0200, "X.Periole" <[EMAIL PROTECTED]> said: > > > I have shown hydrogen bond formation between guanidino > >side chain of > > Arginine and carboxylate in sidechain of Aspartate out > >my simulation > > result using g_hbond. Now I see those two residues are > >well exposed in > > solvent. Since g_hbond compute hydrogen bonds based on > >only distance and > > angles, how I can prove that hydrogen bonds formed > >between those groups > > are by overcoming the dielectric medium of waters? > > What do you mean exactly by "overcoming the dielectric > medium of water" ? > > XAvier > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php -- raja [EMAIL PROTECTED] -- http://www.fastmail.fm - The way an email service should be _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
