> > > I'm also aware of the make_hole tool. My question > here is: Does > > make_hole create a hole of specified dimensions > and orientation, > > according to the solute coordinates? And can you > specify exactly > > where in the membrane you want the whole? > > Make_hole doesn't actually make a hole. You need to > make the > premilinary hole yourself.
Not true, I've made a hole using make_hole. Manually removing central lipids, and using make_hole to finess the rim of the hole is probably more computationally efficient, but make_hole is perfectly capable of doing what the name says (and less labor intensive). __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
