Did you remember to use pbc=xyz in your mdp file? It appears that you
have a molecule broken between P8 and C13 of residue (dpc molecule)
19. While dppc128.pdb has a pbc-broken residue 19, P8 and C13 should
still be on the same side of the boundary (dppc_npat.pdb and
dppc64.pdb have the entire molecule for DPC residue 19 in the same
image).
I haven't used dppc myself, but the files look good. Send some more
info about your setup if you alreaady used pbc=full and the comments
from Mark and Tsjerk don't lead to a solution. Also, pls check to see
if you get any error/warning messages prior to the one that you have
reported.
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