Dear Mark Abraham,
Thanks a lot for the help. I am sorry about the subject line . I just
overlooked it. Regarding ngmx I would try to configure again and check
for the errors. That means I would have to go through the process all
over again. What are the required libraries ?
regards
sharada
Mark Abraham wrote:
sharada wrote:
Hello Erik,
Thank you for suggesting the idea. I have got the required help from
FFTW authors. I could load the Gromacs successfully. I have even done
a test run (pdb2gmx - mdrun) on my protein in water. However I am
unable to finally visualise the animation of the dynamics run using
ngmx. It says command not found. Why is it giving me this error when
all the other programs are working ? I could't locate the link for
this program in any folder. Where is it installed ? My
configure,make,make install and make links didnot give any errors !
Kindly guide me. Thanks in advance.
Sounds like ngmx wasn't installed, probably because it was disabled in
configure, either manually or because you didn't have the requisite
libraries. Try your configure command again and read closely for
motif, lesstif or X related messages. ngmx is the only GROMACS utility
that needs them, so that's why this is the mostly likely cause of the
problem. It wouldn't be flagged as an error, because ngmx is quite
superfluous for most people, and a lot of compute-only systems are set
up without X, and so ngmx can't be compiled...
Also, next time you change topic, please start a new email and use a
relevant subject. This will avoid situations such as the one person
with the answer to your question discarding it unread because they
have no interest in the topic of the old subject line.
Mark
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