Ok, I've got this paper and also the original (I hope so) paper describing the method:
J Comput Chem. 2004 Mar;25(4):479-99. Gallicchio E, Levy RM. AGBNP: an analytic implicit solvent model suitable for molecular dynamics simulations and high-resolution modeling. The method is not very easy to understand and the parameters are incompatible with GROMCACS units and atom types, so implementation should be quite tedious... --- Ran Friedman <[EMAIL PROTECTED]> wrote: > David van der Spoel wrote: > > so what's the reference for that? > > > > it's definitely not in vanilla gromacs, so I > propose contacting the > > groningen group about it. > *Chemical Theory and Computation Special Feature: > Comparative study of > generalized Born models: Protein dynamics* > Hao Fan, Alan E. Mark, Jiang Zhu, and Barry > Honig > PNAS 2005 102: 6760-6764 > > Ran. > > > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please don't post (un)subscribe requests to the > list. Use the > www interface or send it to > [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php ____________________________________________________________________________________ Cheap talk? Check out Yahoo! Messenger's low PC-to-Phone call rates. http://voice.yahoo.com _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
