Ken Rotondi wrote:
These problems are typically due to grompp not finding cpp (make sure
it's in your path) or having opened the top file in some non-linux text
editor. Open the top file in vi and see if you see '*M^*' where you
would expect line breaks. If so your top file is polluted. To change
from mac line breaks to unix use:
tr '\015' '\012' <bad.top> fixed.top
Where '\015' is the mac line break and '\012' is the unix. If it's a
windows prob. you'll have to google for the windows line break code.
I have had occasions where the above did not fix the solution, very
frustrating. If nether of the above fix the problem just re-create your
.mdp file in vi, this always fixes this problem.
On recent Linux platforms, you can use dos2unix and unix2dos to do those
conversions in-place. No idea about Mac.
Mark
_______________________________________________
gmx-users mailing list [email protected]
http://www.gromacs.org/mailman/listinfo/gmx-users
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php